 oriTDB accession number | 100050 |
| Name | oriT_pPL395  |
Sequence Completeness  | core |
| oriT length | 34 nt |
| oriT sequence | CCAGAAGATTCTGGTATACCGTGTTATACCAAAT |
| IR (inverted repeat) | [1-6] [9-14] nt (CCAGAA..TTCTGG) |
| Location of nic site | [23-24] nt |
| Conserved sequence flanking the nic site | TACCGTG|TTAT |
| Note | _ |
Visualization of oriT structure Reference| [1] Alippi AM et al (2014) Tetracycline-resistance encoding plasmids from Paenibacillus larvae, the causal agent of American foulbrood disease, isolated from commercial honeys. Int Microbiol. 17(1):49-61. [PMID:25296446] |
| ID | 48 |
| Name | Mob_pPL395 |
| GenBank accession number | AGX24954 |
| Family | MOBV |
| Length | 439 aa |
| UniProt ID | U5LK84 |
| PDB ID | _ |
| Pfam | Mob_Pre [PF01076.18], Evalue: 5.30E-37, Aligned region: 1..187 |
| Note | nicks plasmid at oriT to initiate conjugation |
| Protein sequence [Download] | MEVYEMAHVQKFTKGNMQGLSIHLDRKTENHSNKNIDTERTHLNYDLCEKDGDTLSRMDE RLSEVYCMNRKDVKVCCEWIVTLPESLHNESVEYQRKFFEETYEFLTDRYGGQENVVSAN VHNDETTPHMHFDFVPVVWDEKKEREKVSAKEVLTRSELKSFHTDLDRHLKERIPEIYQE GILNDKTIGIENIHSLKKYSAEIEQQKEEMANEFKSFKYPQKVLKSIEREVEKKTVGVFN KKEVVMLPAERYEKMKELSNSSIRIQQRFDKYKSKAVEEIKNLKVNVKNFEEDNEHLRYR NIDFGREITLLQKERDRQTENAIVYKSILEEKEPDLQISTLEFQGRLVLHNLENDRMPKN KEEGENWLEILEENKEEKTIPQNRLEKAIGKIKLFLEKFIKRAKEADFSMDWLVEKNKEL SQQRQQQKKTKSRSSGMEL |
Reference| # | ID | Name | GenBank | Length | Note |
| 1 | 79 | _ |
| ID | 48 |
| Plasmid name | pPL395 |
| GenBank accession number | KF440690.1 |
| Genome size | 5030 bp |
| Coordinate of oriT [Strand] | 3425..3458 [+] |
| Drug resistance | resistance to tetracycline |
| Heavy-metal resistance | _ |
| Virulence factor | _ |
| Xenobiotic degradation | _ |
| Host bacterium [NCBI Taxonomy ID] | Paenibacillus larvae PL395 [1464] |
Reference| [1] Alippi AM et al (2014) Tetracycline-resistance encoding plasmids from Paenibacillus larvae, the causal agent of American foulbrood disease, isolated from commercial honeys. Int Microbiol. 17(1):49-61. [PMID:25296446] |