SecReT4

T4SS
References

T4SS ID	587
Strain	Yersinia ruckeri plasmid pYR1 (NC_009139)
Replicon	plasmid pYR1 [Browse all T4SS(s) in this replicon]
Accession	NC_009139
Location	49823..77989; 146831..154920
Name	Tra_F
Function	conjugation
Classification	Type IVA; Type F
Experimental investigation has been performed on this T4SS.

T4SS components

Component	TraA_F	TraB_F	TraC_F	TraD_F	TraE_F	TraF_F	TraG_F	TraH_F	TraI_F
Number	1	1	1	1	1	1	1	1	1
Component	TraK_F	TraL_F	TraM_F	TraN_F	TraQ_F	TraU_F	TraV_F	TraW_F	TraX_F
Number	1	1	0	1	0	1	1	1	0
Component	TraY_F	TrbC_F	Orf169_F
Number	0	0	1

The information of T4SS components from NC_009139
Region 1: 49823..77989

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	YR71pYR1_0068	44941..45225 [+], 285	134044586	hypothetical protein
2	YR71pYR1_0069	45332..46099 [+], 768	134044630	putative lipoprotein
3	YR71pYR1_0070	46128..46616 [-], 489	134044573	hypothetical protein
4	YR71pYR1_0071 (topB)	46631..48823 [-], 2193	134044502	DNA topoisomerase III
5	YR71pYR1_0072	49038..49655 [-], 618	134044621	putative lipoprotein
6	YR71pYR1_0073 (traI)	49823..52801 [+], 2979	134044609	type IV conjugative transfer system protein TraI	TraI_F
7	YR71pYR1_0074 (traD)	52798..54663 [+], 1866	134044512	type IV conjugative transfer system protein TraD	TraD_F
8	YR71pYR1_0075	54674..55258 [+], 585	134044476	hypothetical protein
9	YR71pYR1_0076	55215..55844 [+], 630	134044577	putative type IV conjugative transfer system coupling factor
10	YR71pYR1_0077	55854..56300 [+], 447	134044510	hypothetical protein
11	YR71pYR1_0078	56310..56687 [+], 378	134044509	hypothetical protein
12	YR71pYR1_0079	56687..57349 [+], 663	134044542	hypothetical protein
13	YR71pYR1_0080	57685..58050 [+], 366	134044631	hypothetical protein
14	YR71pYR1_0081 (traL)	58195..58476 [+], 282	134044637	type IV conjugative transfer system protein TraL	TraL_F
15	YR71pYR1_0082 (traE)	58473..59099 [+], 627	134044523	type IV conjugative transfer system protein TraE	TraE_F
16	YR71pYR1_0083	59185..60000 [+], 816	134044634	hypothetical protein	TraK_F
17	YR71pYR1_0084 (traB)	59997..61313 [+], 1317	134044613	type IV conjugative transfer system protein TraB	TraB_F
18	YR71pYR1_0085 (traV)	61310..61888 [+], 579	134044619	type IV conjugative transfer system protein TraV	TraV_F
19	YR71pYR1_0086 (traA)	61901..62284 [+], 384	134044575	type IV conjugative transfer system protein TraA	TraA_F
20	YR71pYR1_0087	62485..68016 [+], 5532	134044632	hypothetical protein
21	YR71pYR1_0088	68165..68872 [+], 708	134044540	hypothetical protein
22	YR71pYR1_0089 (traC)	68869..71316 [+], 2448	134044488	type IV conjugative transfer system protein TraC	TraC_F
23	YR71pYR1_0090	71331..71648 [+], 318	134044526	hypothetical protein
24	YR71pYR1_0091	71645..72175 [+], 531	134044521	type IV conjugative transfer system signal peptidase
25	YR71pYR1_0092 (traW)	72138..73403 [+], 1266	134044622	type IV conjugative transfer system protein TraW	TraW_F
26	YR71pYR1_0093	73400..74071 [+], 672	134044500	cyclic diguanylate phosphodiesterase domain-containing protein
27	YR71pYR1_0094 (traU)	74068..75075 [+], 1008	134044633	type IV conjugative transfer system protein TraU	TraU_F
28	YR71pYR1_0095 (traN)	75191..77989 [+], 2799	134044505	conjugal transfer mating pair stabilization protein TraN	TraN_F
29	YR71pYR1_0096	78028..78888 [-], 861	134044602	hypothetical protein
30	YR71pYR1_0097	79011..79652 [-], 642	134044467	hypothetical protein
31	YR71pYR1_0098	79946..80266 [+], 321	134044583	hypothetical protein
32	YR71pYR1_0099	80570..80755 [+], 186	134044561	hypothetical protein
33	YR71pYR1_0100	80975..81943 [+], 969	134044568	AAA family ATPase
34	YR71pYR1_0101	81954..82862 [+], 909	134044484	hypothetical protein

Region 2: 146831..154920

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	YR71pYR1_0170	142034..142525 [+], 492	134044618	hypothetical protein
2	YR71pYR1_0171	142842..143717 [+], 876	134044600	DNA replication terminus site-binding protein
3	YR71pYR1_0172	143870..144910 [+], 1041	134044491	hypothetical protein
4	YR71pYR1_0173	144910..145188 [+], 279	134044486	hypothetical protein
5	YR71pYR1_0174	145197..146708 [+], 1512	134044543	hypothetical protein
6	YR71pYR1_0175 (traF)	146831..147859 [+], 1029	134044606	type IV conjugative transfer system protein TraF	TraF_F
7	YR71pYR1_0176 (traH)	147940..149373 [+], 1434	134044544	type IV conjugative transfer system protein TraH	TraH_F
8	YR71pYR1_0177 (traG)	149386..153000 [+], 3615	134044454	type IV conjugative transfer system protein TraG	TraG_F
9	YR71pYR1_0178	153037..153399 [-], 363	134044587	hypothetical protein
10	YR71pYR1_0179	154115..154387 [+], 273	134044489	Ner-like DNA-binding protein
11	YR71pYR1_0180	154387..154920 [+], 534	134044579	transglycosylase SLT domain-containing protein	Orf169_F
12	YR71pYR1_0181	154931..155539 [+], 609	134044459	hypothetical protein
13	YR71pYR1_0182	155536..156087 [+], 552	134044623	hypothetical protein
14	YR71pYR1_0183	156148..156567 [-], 420	134044456	hypothetical protein
15	YR71pYR1_0184	156569..156862 [-], 294	134044563	hypothetical protein
16	YR71pYR1_0185	156879..157862 [-], 984	134044554	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Welch TJ; Fricke WF; McDermott PF; White DG; Rosso ML; Rasko DA; Mammel MK; Eppinger M; Rosovitz MJ; Wagner D; Rahalison L; Leclerc JE; Hinshaw JM; Lindler LE; Cebula TA; Carniel E; Ravel J (2007). Multiple antimicrobial resistance in plague: an emerging public health risk. PLoS One. 2(3):e309. [PudMed:17375195]