SecReT4

T4SS
References

T4SS ID	566
Strain	Orientia tsutsugamushi str. Ikeda
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_010793
Location	413970..438170
Name	Tra_F
Function	NA
Classification	Type IVA; Type F
This T4SS has been mentioned in a genome sequencing report.

T4SS components

Component	TraA_F	TraB_F	TraC_F	TraD_F	TraE_F	TraF_F	TraG_F	TraH_F	TraI_F
Number	0	1	1	1	1	1	2	1	2
Component	TraK_F	TraL_F	TraM_F	TraN_F	TraQ_F	TraU_F	TraV_F	TraW_F	TraX_F
Number	0	0	0	1	0	1	1	0	0
Component	TraY_F	TrbC_F	Orf169_F
Number	0	1	0

The information of T4SS components from NC_010793

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	OTT_0391	409532..410122 [+], 591	189183298	hypothetical protein
2	OTT_0392	410134..411795 [+], 1662	189183299	hypothetical protein
3	OTT_0393	412409..413194 [+], 786	189183300	exodeoxyribonuclease III
4	OTT_0394	413236..413691 [-], 456	189183301	conjugative transfer protein TraD
5	OTT_0395	413970..415286 [+], 1317	189183302	conjugative transfer protein TraA	TraI_F
6	OTT_0396	415271..415981 [+], 711	189183303	conjugative transfer protein TraA	TraI_F
7	OTT_0397	415996..416820 [+], 825	189183304	conjugative transfer protein TraA
8	OTT_0398	416849..418504 [-], 1656	189183305	ankyrin repeat-containing protein 10_01
9	OTT_0399	418665..419783 [+], 1119	189183306	conjugative transfer protein TraI
10	OTT_0400	419768..420832 [+], 1065	189183307	transposase
11	OTT_0401	420842..422596 [-], 1755	189183308	conjugative transfer protein TraD	TraD_F
12	OTT_0402	422602..423741 [-], 1140	189183309	TPR repeat-containing protein 01_03
13	OTT_0403	423750..426077 [-], 2328	189183310	conjugative transfer protein TraG	TraG_F
14	OTT_0404	426160..427122 [-], 963	189183311	transposase
15	OTT_0405	427299..427634 [-], 336	189183312	conjugative transfer protein TraG	TraG_F
16	OTT_0406	427634..428935 [-], 1302	189183313	conjugative transfer protein TraH	TraH_F
17	OTT_0407	429011..429637 [-], 627	189183314	conjugative transfer protein TraF	TraF_F
18	OTT_0408	429634..430833 [-], 1200	189183315	conjugative transfer protein TraN	TraN_F
19	OTT_0409	430884..431324 [-], 441	189183316	conjugative transfer protein TraN
20	OTT_0410	431321..431641 [-], 321	189183317	conjugative transfer protein TrbC	TrbC_F
21	OTT_0411	431726..432409 [-], 684	189183318	conjugative transfer protein TraU	TraU_F
22	OTT_0412	432777..433814 [+], 1038	189183319	ankyrin repeat-containing protein 05_02
23	OTT_0413	433728..434882 [-], 1155	189183320	conjugative transfer protein TraC	TraC_F
24	OTT_0414	434980..435300 [-], 321	189183321	hypothetical protein	TraV_F
25	OTT_0415	435300..436628 [-], 1329	189183322	conjugative transfer protein TraB	TraB_F
26	OTT_0416	436671..437000 [-], 330	189183323	hypothetical protein
27	OTT_0417	437145..437621 [-], 477	189183324	hypothetical protein
28	OTT_0418	437751..438170 [-], 420	189183325	conjugative transfer protein TraE	TraE_F
29	OTT_0419	438170..438493 [-], 324	189183326	hypothetical protein
30	OTT_0420	438829..439212 [-], 384	189183327	integrase
31	OTT_0421	439453..439659 [-], 207	189183328	integrase
32	OTT_0422	439613..440023 [-], 411	189183329	integrase
33	OTT_0423	440441..440800 [-], 360	189183330	transposase
34	OTT_0424 (spo0J)	441094..441975 [-], 882	189183331	Spo0J protein
35	OTT_0425 (soj)	441987..442784 [-], 798	189183332	Soj protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Nakayama K; Yamashita A; Kurokawa K; Morimoto T; Ogawa M; Fukuhara M; Urakami H; Ohnishi M; Uchiyama I; Ogura Y; Ooka T; Oshima K; Tamura A; Hattori M; Hayashi T (2008). The Whole-genome sequencing of the obligate intracellular bacterium Orientia tsutsugamushi revealed massive gene amplification during reductive genome evolution. DNA Res. 15(4):185-99. [PudMed:18508905]