SecReT4

T4SS
References

T4SS ID	559
Strain	Orientia tsutsugamushi str. Ikeda
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_010793
Location	95834..136215
Name	Tra_F
Function	NA
Classification	Type IVA; Type F
This T4SS has been mentioned in a genome sequencing report.

T4SS components

Component	TraA_F	TraB_F	TraC_F	TraD_F	TraE_F	TraF_F	TraG_F	TraH_F	TraI_F
Number	0	1	2	2	1	0	1	0	1
Component	TraK_F	TraL_F	TraM_F	TraN_F	TraQ_F	TraU_F	TraV_F	TraW_F	TraX_F
Number	0	0	0	0	0	2	1	2	0
Component	TraY_F	TrbC_F	Orf169_F
Number	0	0	0

The information of T4SS components from NC_010793

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	OTT_0087	91586..92032 [+], 447	189182994	hypothetical protein
2	OTT_0088 (purC)	92016..92750 [+], 735	189182995	phosphoribosylaminoimidazole-succinocarboxamide synthase
3	OTT_0089	93230..93472 [+], 243	189182996	transposase
4	OTT_0090	93889..94233 [+], 345	189182997	integrase
5	OTT_0091	94443..94784 [+], 342	189182998	integrase
6	OTT_0092	95455..95604 [+], 150	189182999	hypothetical protein
7	OTT_0093	95604..95747 [+], 144	189183000	conjugative transfer protein TraE
8	OTT_0094	95834..96157 [+], 324	189183001	conjugative transfer protein TraE	TraE_F
9	OTT_0095	96154..96456 [+], 303	189183002	hypothetical protein
10	OTT_0096	96456..96560 [+], 105	189183003	hypothetical protein
11	OTT_0097	96672..96899 [+], 228	189183004	conjugative transfer protein TraB
12	OTT_0098	96862..97131 [+], 270	189183005	conjugative transfer protein TraB	TraB_F
13	OTT_0099	97131..97460 [+], 330	189183006	hypothetical protein	TraV_F
14	OTT_0100	97372..99453 [+], 2082	189183007	conjugative transfer protein TraC	TraC_F
15	OTT_0101	99652..99930 [+], 279	189183008	conjugative transfer protein TraC
16	OTT_0102	99927..100586 [+], 660	189183009	conjugative transfer protein TraW	TraW_F
17	OTT_0103	100672..100875 [+], 204	189183010	hypothetical protein
18	OTT_0104	100876..101853 [+], 978	189183011	conjugative transfer protein TraU	TraU_F
19	OTT_0105	102142..103110 [+], 969	189183012	transposase
20	OTT_0106	103375..103818 [+], 444	189183013	conjugative transfer protein TraG	TraG_F
21	OTT_0107	104006..104392 [+], 387	189183014	TPR repeat-containing protein 01_01
22	OTT_0108	104424..104681 [+], 258	189183015	TPR repeat-containing protein 01_02
23	OTT_0109	104687..105031 [+], 345	189183016	conjugative transfer protein TraD
24	OTT_0110	105092..105421 [+], 330	189183017	conjugative transfer protein TraD	TraD_F
25	OTT_0111	106106..108577 [+], 2472	189183018	hypothetical protein
26	OTT_0112	109258..110124 [+], 867	189183019	transposase
27	OTT_0113	110125..110466 [+], 342	189183020	transposase
28	OTT_0114	110396..110794 [+], 399	189183021	transposase
29	OTT_0115	111173..112264 [+], 1092	189183022	conjugative transfer protein TraD	TraD_F
30	OTT_0116	112274..113257 [-], 984	189183023	transposase
31	OTT_0117	113309..114379 [-], 1071	189183024	conjugative transfer protein TraI
32	OTT_0118	114710..116458 [-], 1749	189183025	conjugative transfer protein TraA	TraI_F
33	OTT_0119	116500..116958 [-], 459	189183026	conjugative transfer protein TraA
34	OTT_0120	117167..117622 [+], 456	189183027	conjugative transfer protein TraD
35	OTT_0121	117946..118230 [+], 285	189183028	TPR repeat-containing protein 02_01
36	OTT_0122	118734..118853 [-], 120	189183029	transposase
37	OTT_0123	119302..122739 [+], 3438	189183030	sensor histidine kinase/response regulator/transporter hybrid protein
38	OTT_0124	123417..123773 [-], 357	189183031	transposase
39	OTT_0125	123909..124847 [-], 939	189183032	hypothetical protein
40	OTT_0126	124969..125556 [-], 588	189183033	RelA/SpoT-related protein
41	OTT_0127	125598..126092 [-], 495	189183034	hypothetical protein
42	OTT_0128	126111..127049 [-], 939	189183035	hypothetical protein
43	OTT_0129	127072..127545 [-], 474	189183036	hypothetical protein
44	OTT_0130	127587..127868 [-], 282	189183037	hypothetical protein
45	OTT_0131	127997..128287 [-], 291	189183038	hypothetical protein
46	OTT_0132	128515..128814 [-], 300	189183039	hypothetical protein
47	OTT_0133	128798..129937 [+], 1140	189183040	reverse transcriptase
48	OTT_0134	130360..130545 [-], 186	189183041	conjugative transfer protein TraN
49	OTT_0135	130582..130980 [-], 399	189183042	conjugative transfer protein TraN
50	OTT_0136	131027..131971 [-], 945	189183043	conjugative transfer protein TraU	TraU_F
51	OTT_0137	132009..132623 [-], 615	189183044	conjugative transfer protein TraW	TraW_F
52	OTT_0138	132923..134014 [-], 1092	189183045	hypothetical protein
53	OTT_0139	134167..136215 [-], 2049	189183046	conjugative transfer protein TraC	TraC_F
54	OTT_0140	136124..136453 [-], 330	189183047	hypothetical protein
55	OTT_0141	136453..136635 [-], 183	189183048	conjugative transfer protein TraB
56	OTT_0142	136665..136982 [-], 318	189183049	conjugative transfer protein TraE
57	OTT_0143	136982..137131 [-], 150	189183050	hypothetical protein
58	OTT_0144	137625..138764 [-], 1140	189183051	reverse transcriptase
59	OTT_0145	138748..139047 [+], 300	189183052	hypothetical protein
60	OTT_0146	139367..139624 [+], 258	189183053	hypothetical protein
61	OTT_0147	140149..140514 [-], 366	189183054	transposase

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Nakayama K; Yamashita A; Kurokawa K; Morimoto T; Ogawa M; Fukuhara M; Urakami H; Ohnishi M; Uchiyama I; Ogura Y; Ooka T; Oshima K; Tamura A; Hattori M; Hayashi T (2008). The Whole-genome sequencing of the obligate intracellular bacterium Orientia tsutsugamushi revealed massive gene amplification during reductive genome evolution. DNA Res. 15(4):185-99. [PudMed:18508905]