SecReT4

T4SS
References

T4SS ID	551
Strain	Candidatus Protochlamydia amoebophila UWE25
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_005861
Location	1697757..1716241
Name	Tra_F
Function	conjugation
Classification	Type IVA; Type F
Bioinformatics investigation has been performed on this T4SS.

T4SS components

Component	TraA_F	TraB_F	TraC_F	TraD_F	TraE_F	TraF_F	TraG_F	TraH_F	TraI_F
Number	0	1	1	1	1	1	1	1	0
Component	TraK_F	TraL_F	TraM_F	TraN_F	TraQ_F	TraU_F	TraV_F	TraW_F	TraX_F
Number	1	1	0	1	0	1	0	1	0
Component	TraY_F	TrbC_F	Orf169_F
Number	0	1	0

The information of T4SS components from NC_005861

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	pc1418	1693840..1694943 [+], 1104	46447052	hypothetical protein
2	pc1419	1695418..1696245 [+], 828	46447053	hypothetical protein
3	pc1420	1696410..1696814 [-], 405	46447054	hypothetical protein
4	pc1421	1697418..1697735 [+], 318	46447055	hypothetical protein
5	pc1422	1697757..1698062 [+], 306	46447056	hypothetical protein	TraL_F
6	pc1423 (traE)	1698071..1698640 [+], 570	46447057	F pilus assembly protein traE	TraE_F
7	pc1424	1698641..1699333 [+], 693	46447058	hypothetical protein	TraK_F
8	pc1425 (traB)	1699404..1700630 [+], 1227	46447059	F pilus assembly protein traB	TraB_F
9	pc1426	1700887..1701381 [-], 495	46447060	hypothetical protein
10	pc1427	1701456..1701896 [-], 441	46447061	hypothetical protein
11	pc1428	1701958..1702431 [+], 474	46447062	hypothetical protein
12	pc1429	1702424..1702798 [+], 375	46447063	hypothetical protein
13	pc1430 (traC)	1702800..1705286 [+], 2487	46447064	inner-membrane protein traC	TraC_F
14	pc1431 (traF)	1705274..1705756 [+], 483	46447065	F pilus assembly protein traF
15	pc1432 (traW)	1705741..1706373 [+], 633	46447066	F pilus assembly protein traW	TraW_F
16	pc1433 (trbC)	1706382..1706978 [+], 597	46447067	F pilus assembly protein trbC	TrbC_F
17	pc1434 (traU)	1707047..1707982 [+], 936	46447068	F pilus assembly protein traU	TraU_F
18	pc1435	1707925..1708692 [+], 768	46447069	hypothetical protein
19	pc1436	1708784..1708969 [+], 186	46447070	hypothetical protein
20	pc1437 (traN)	1709083..1709637 [+], 555	46447071	conjugative transfer protein traN	TraN_F
21	pc1438 (traF)	1709634..1710425 [+], 792	46447072	F pilus assembly protein traF	TraF_F
22	pc1439 (traH)	1710422..1711780 [+], 1359	46447073	F pilus assembly protein traH	TraH_F
23	pc1440 (traG)	1711791..1714574 [+], 2784	46447074	conjugative transfer protein traG	TraG_F
24	pc1441 (traD)	1714571..1716241 [+], 1671	46447075	conjugative transfer protein traD	TraD_F
25	pc1442	1716302..1716655 [+], 354	46447076	hypothetical protein
26	pc1443	1716648..1717004 [+], 357	46447077	hypothetical protein
27	pc1444	1717137..1717400 [+], 264	46447078	hypothetical protein
28	pc1445	1717579..1717860 [+], 282	46447079	hypothetical protein
29	pc1446	1718022..1718702 [+], 681	46447080	hypothetical protein
30	pc1447	1718994..1719326 [+], 333	46447081	hypothetical protein
31	pc1448	1719350..1720123 [+], 774	46447082	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Greub G; Collyn F; Guy L; Roten CA (2004). A genomic island present along the bacterial chromosome of the Parachlamydiaceae UWE25, an obligate amoebal endosymbiont, encodes a potentially functional F-like conjugative DNA transfer system. BMC Microbiol. 4:48. [PudMed:15615594]