SecReT4

T4SS
References

T4SS ID	187
Strain	Xanthomonas campestris pv. vesicatoria str. 85-10
Replicon	plasmid pXCV183 [Browse all T4SS(s) in this replicon]
Accession	NC_007507
Location	6587..9318; 32545..35692; 45982..50471; 169614..179867
Name	Dot/Icm
Function	NA
Classification	Type IVB; Type I
This T4SS has been mentioned in a genome sequencing report.

T4SS components

Component	DotA	DotB	DotC	DotD	IcmB	IcmC	IcmD	IcmE	IcmF
Number	1	1	1	1	1	1	0	1	0
Component	IcmG	IcmH	IcmJ	IcmK	IcmL	IcmM	IcmN	IcmO	IcmP
Number	1	0	1	1	1	0	0	1	1
Component	IcmQ	IcmR	IcmS	IcmT	IcmV	IcmW	IcmX	LvgA
Number	0	0	0	1	0	1	0	0

The information of T4SS components from NC_007507
Region 1: 6587..9318

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	XCVd0002 (repB)	1745..2743 [+], 999	78045311	replication protein B
2	XCVd0003 (parB)	3543..4424 [-], 882	78045312	chromosome partitioning protein
3	XCVd0004	4890..6344 [-], 1455	78045313	hypothetical protein
4	XCVd0005 (dotD)	6587..7081 [+], 495	78045314	DotD-like type IV secretion system protein	DotD
5	XCVd0006 (dotC)	7068..7847 [+], 780	78045315	DotC-like type IV secretion system protein	DotC
6	XCVd0007 (dotB)	7844..9040 [+], 1197	78045316	DotB-like type IV secretion system protein	DotB
7	XCVd0008 (icmT)	9037..9318 [+], 282	78045317	IcmT-like type IV secretion system protein	IcmT
8	XCVd0009	9367..9798 [+], 432	78045318	hypothetical protein
9	XCVd0010	10265..10798 [+], 534	78045319	hypothetical protein
10	XCVd0011 (pilL)	11295..12134 [+], 840	78045320	PilL-like lipoprotein
11	XCVd0012 (pilN)	12131..13867 [+], 1737	78045321	PilN-like type II and III secretion system protein

Region 2: 32545..35692

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	XCVd0025	28387..28680 [-], 294	78045334	ISxac3 transposase (fragment)
2	XCVd0026	29447..30427 [-], 981	78045335	IS1479 transposase
3	XCVd0027 (dotA)	32545..35127 [-], 2583	78045336	TraY/DotA-like type IV secretion system protein	DotA
4	XCVd0028	35189..35692 [+], 504	78045337	hypothetical protein	IcmW
5	XCVd0029	35682..36182 [+], 501	78045338	secreted protein
6	XCVd0030	36182..37318 [+], 1137	78045339	secreted protein
7	XCVd0031	37318..38148 [+], 831	78045340	secreted protein
8	XCVd0032	38145..38759 [+], 615	78045341	secreted protein
9	XCVd0033	38840..39757 [+], 918	78045342	M23 family peptidase precursor

Region 3: 45982..50471

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	XCVd0035	41128..41364 [+], 237	78045344	hypothetical protein
2	XCVd0036	41367..42923 [+], 1557	78045345	DNA topoisomerase
3	XCVd0037	43329..43754 [+], 426	78045346	hypothetical protein
4	XCVd0038	43756..44811 [+], 1056	78045347	hypothetical protein
5	XCVd0039	44808..45305 [+], 498	78045348	hypothetical protein
6	XCVd0040	45302..45985 [+], 684	78045349	lytic murein transglycosylase
7	XCVd0041 (icmP)	45982..47133 [+], 1152	78045350	IcmP-like type IV secretion system protein	IcmP
8	XCVd0042	47114..47893 [+], 780	78045351	hypothetical protein
9	XCVd0043 (icmO)	47904..50471 [+], 2568	78045352	IcmO-like type IV secretion system protein	IcmO
10	XCVd0044	50461..51081 [+], 621	78045353	secreted protein
11	XCVd0045 (dsbG)	51069..51857 [+], 789	78045354	disulfide isomerase/thiol-disulfide oxidase
12	XCVd0046	51901..52344 [+], 444	78045355	hypothetical protein
13	XCVd0047	52552..53637 [+], 1086	78045356	antirestriction protein
14	XCVd0048	53668..54459 [+], 792	78045357	hypothetical protein

Region 4: 169614..179867

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	XCVd0156	165376..166632 [-], 1257	78045465	hypothetical protein
2	XCVd0157	166833..167162 [-], 330	78045466	hypothetical protein
3	XCVd0158	167159..167962 [-], 804	78045467	hypothetical protein
4	XCVd0159	168022..168681 [-], 660	78045468	hypothetical protein
5	XCVd0160	168678..169250 [-], 573	78045469	hypothetical protein
6	XCVd0161	169241..169597 [-], 357	78045470	secreted protein
7	XCVd0162 (icmB)	169614..172661 [-], 3048	78045471	IcmB-like type IV secretion system protein	IcmB
8	XCVd0163	172923..174167 [-], 1245	78045472	hypothetical protein
9	XCVd0164 (icmJ)	174157..174909 [-], 753	78045473	IcmJ-like type IV secretion system protein	IcmJ
10	XCVd0165	174921..175325 [-], 405	78045474	hypothetical protein
11	XCVd0166 (icmC)	175361..175891 [-], 531	78045475	IcmC-like type IV secretion system protein	IcmC
12	XCVd0167 (icmG)	175901..176722 [-], 822	78045476	IcmG-like type IV secretion system protein	IcmG
13	XCVd0168 (icmE)	176852..178099 [-], 1248	78045477	IcmE-like type IV secretion system protein	IcmE
14	XCVd0169 (icmK)	178096..179037 [-], 942	78045478	IcmK-like type IV secretion system protein	IcmK
15	XCVd0170 (icmL)	179034..179867 [-], 834	78045479	IcmL-like type IV secretion system protein	IcmL
16	XCVd0171	180223..180744 [-], 522	78045480	hypothetical protein
17	XCVd0172	181061..182371 [-], 1311	78045481	replication protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Thieme F; Koebnik R; Bekel T; Berger C; Boch J; Buttner D; Caldana C; Gaigalat L; Goesmann A; Kay S; Kirchner O; Lanz C; Linke B; McHardy AC; Meyer F; Mittenhuber G; Nies DH; Niesbach-Klosgen U; Patschkowski T; Ruckert C; Rupp O; Schneiker S; Schuster SC; Vorholter FJ; Weber E; Puhler A; Bonas U; Bartels D; Kaiser O (2005). Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence. J Bacteriol. 187(21):7254-66. [PudMed:16237009]