 ICEberg ID | 25_IME |
Name  | IME_Sag2603_rpmG  |
| Family | - |
| Organism | Streptococcus agalactiae 2603V/R |
| Size (bp) | 8.62 kb |
| GC content [Genome] (%) | |
| Insertion site | 3' rpmG adjacent |
| Function | - |
| Species that IME can be transferred to | - |
| Nucleotide Sequence | AE009948 (partical IME sequence) |
| Putative oriT region | - |
| Putative relaxase | - |
The graph information of IME_Sag2603_rpmG components from AE009948 | |||||
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| Incomplete gene list of IME_Sag2603_rpmG from AE009948 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product | *Reannotation | |
| 1 | SAG2106 | 2086560..2087504 [-], 945 | conserved hypothetical protein | ||
| 2 | aspS | 2087494..2089245 [-], 1752 | aspartyl-tRNA synthetase | ||
| 3 | hisS | 2089338..2090618 [-], 1281 | histidyl-tRNA synthetase | ||
| 4 | rpmF | 2090838..2091020 [+], 183 | ribosomal protein L32 | ||
| 5 | rpmG-3 | 2091036..2091185 [+], 150 | ribosomal protein L33 | ||
| 6 | SAG2111 | 2091333..2091854 [-], 522 | conserved hypothetical protein | ||
| 7 | SAG2112 | 2091952..2093436 [-], 1485 | site-specific recombinase, phage integrase family | Integrase | |
| 8 | SAG2113 | 2093446..2093694 [-], 249 | conserved hypothetical protein | ||
| 9 | SAG2114 | 2093760..2094788 [-], 1029 | conserved hypothetical protein | ||
| 10 | SAG2115 | 2094791..2095222 [-], 432 | hypothetical protein | ||
| 11 | SAG2116 | 2095498..2095953 [-], 456 | conserved hypothetical protein | ||
| 12 | SAG2117 | 2095953..2096168 [-], 216 | hypothetical protein | ||
| 13 | SAG2118 | 2096491..2097411 [+], 921 | transcriptional regulator, Cro/CI family | ||
 Flanking regions |
 Gene may contribute to site-specific recombination |
| (1) Coluzzi C; Guedon G; Devignes MD; Ambroset C; Loux V; Lacroix T; Payot S; Leblond-Bourget N (2017). A Glimpse into the World of Integrative and Mobilizable Elements in Streptococci Reveals an Unexpected Diversity and Novel Families of Mobilization Proteins. Front Microbiol. 0.640972222. [PudMed:28373865] |
| (2) Bellanger X; Payot S; Leblond-Bourget N; Guedon G (2014). Conjugative and mobilizable genomic islands in bacteria: evolution and diversity. FEMS Microbiol Rev. 38(4):720-60. [PudMed:24372381] |
(3) Brochet M; Couve E; Glaser P; Guedon G; Payot S (2008). Integrative conjugative elements and related elements are major contributors to the genome diversity of Streptococcus agalactiae. J Bacteriol. 190(20):6913-7. [PudMed:18708498] 
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| experimental literature |
| in silico analysis literature |