ICEberg
I. Information of IME
ICEberg ID190_IME
Name MTnPi8 This is a predicted IME derived from literature
Family-
OrganismPrevotella intermedia s 17
Size (bp)11735 bp
GC content [Genome] (%)
Insertion site-
Function-
Species that IME can be transferred to-
Nucleotide SequenceNC_017861 (complete IME sequence in this genome)
Replicon-
Genome coordinates1036448..1048182
Putative oriT region -
Putative relaxase coordinates: 1042285..1043205; PIN17_RS06840  Family:  MOBP


II. IME interaction with ICE/CIME/Plasmids

The interaction information of MTnPi8 is not available.


The graph information of MTnPi8 components from NC_017861
Complete gene list of MTnPi8 from NC_017861
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1PIN17_RS067951032576..1034015 [-], 1440alpha/beta hydrolase
2PIN17_RS068001034339..1036240 [+], 1902molecular chaperone DnaK
3PIN17_RS068051036448..1037005 [+], 558DNA-binding proteinIntegrase 
4PIN17_RS068151038291..1039037 [+], 747hypothetical protein
5PIN17_RS068201039137..1039493 [+], 357DNA-binding protein
6PIN17_RS068251039505..1040719 [+], 1215virulence-associated protein E
7PIN17_RS068301040938..1041828 [+], 891mobilization protein
8PIN17_RS068401042285..1043205 [+], 921mobilization proteinRelaxase 
9PIN17_RS068451043208..1043870 [+], 663hypothetical protein
10PIN17_RS068501043971..1044177 [+], 207XRE family transcriptional regulator
11PIN17_RS068551044185..1045066 [+], 882cell filamentation protein Fic
12PIN17_RS068601045261..1046817 [+], 1557hypothetical protein
13PIN17_RS068651046823..1047929 [+], 1107hypothetical protein
14PIN17_RS068701048141..1048482 [+], 342hypothetical protein
15PIN17_RS068751048612..1049070 [+], 459hypothetical protein
16PIN17_RS068801049264..1050001 [+], 738ion transporter
17PIN17_RS068851050115..1050570 [+], 456hypothetical protein
18PIN17_RS068901050752..1053061 [+], 2310hypothetical protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins12Fasta
(1) Naito M; Ogura Y; Itoh T; Shoji M; Okamoto M; Hayashi T; Nakayama K (2016). The complete genome sequencing of Prevotella intermedia strain OMA14 and a subsequent fine-scale, intra-species genomic comparison reveal an unusual amplification of conjugative and mobile transposons and identify a novel Prevotella-lineage-specific repeat. DNA Res. 23(1):11-9. [PudMed:26645327] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU