ICEberg
I. Information of IME
ICEberg ID160_IME
Name IMEAcaSM.1 This is a predicted IME derived from literature
Family-
OrganismAcidithiobacillus caldus s SM-1
Size (bp)80923 bp
GC content [Genome] (%)
Insertion site-
Function-
Species that IME can be transferred to-
Nucleotide SequenceNC_015850 (complete IME sequence in this genome)
Replicon-
Genome coordinates1008592..1088974
Putative oriT region -
Putative relaxase coordinates: 1016198..1019416; ATC_RS05105  Family:  MOBF


II. IME interaction with ICE/CIME/Plasmids

The interaction information of IMEAcaSM.1 is not available.


The graph information of IMEAcaSM.1 components from NC_015850
Complete gene list of IMEAcaSM.1 from NC_015850
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1ATC_RS050451004336..1005346 [+], 1011hypothetical protein
2ATC_RS050501005334..1006341 [+], 1008endolytic transglycosylase MltG
3ATC_RS050551006334..1006987 [+], 654dTMP kinase
4ATC_RS050601006980..1007990 [+], 1011DNA polymerase III subunit delta'
5ATC_RS050651007974..1008327 [+], 354pilus assembly protein PilZ
6ATC_RS050751008592..1009602 [+], 1011site-specific integraseIntegrase 
7ATC_RS050801009837..1012197 [-], 2361hypothetical proteinDotA, T4SS component 
8ATC_RS050851012257..1012478 [-], 222hypothetical protein
9ATC_RS050901012597..1013859 [-], 1263IS256 family transposase
10ATC_RS050951013904..1015793 [-], 1890hypothetical proteinT4CP 
11ATC_RS051001015808..1016131 [-], 324hypothetical protein
12ATC_RS051051016198..1019416 [-], 3219conjugative relaxaseRelaxase 
13ATC_RS051101019413..1020033 [-], 621hypothetical protein
14ATC_RS051201020460..1021677 [+], 1218ISL3-like element ISAtc2 family transposase
15ATC_RS051251021770..1022984 [+], 1215ISL3 family transposase
16ATC_RS051301022942..1025206 [-], 2265hypothetical protein
17ATC_RS051351025203..1026114 [-], 912hypothetical protein
18ATC_RS051401027150..1028937 [+], 1788integrase
19ATC_RS051451030211..1030996 [+], 786hypothetical protein
20ATC_RS051501031389..1032444 [+], 1056IS5 family transposase
21ATC_RS051551032610..1033521 [+], 912LysR family transcriptional regulator
22ATC_RS051601033677..1035371 [+], 1695NADH dehydrogenase
23ATC_RS051651035368..1037773 [+], 2406DUF2309 domain-containing protein
24ATC_RS051701037860..1038906 [+], 1047hypothetical protein
25ATC_RS051751038944..1039816 [+], 873hypothetical protein
26ATC_RS051801039903..1041588 [+], 1686dihydroxy-acid dehydratase
27ATC_RS162951042156..1043142 [+], 987threonylcarbamoyl-AMP synthase
28ATC_RS051851043163..1043990 [+], 828hypothetical protein
29ATC_RS051951044700..1045089 [+], 390DUF2784 family protein
30ATC_RS052001045451..1046350 [+], 900IS1595 family transposase
31ATC_RS052051046412..1047098 [-], 687phosphoribosyl transferase
32ATC_RS052101047362..1047706 [-], 345DUF962 domain-containing protein
33ATC_RS052151047711..1048094 [-], 384hypothetical protein
34ATC_RS052201048472..1049527 [+], 1056IS5 family transposase
35ATC_RS052251049690..1050268 [-], 579AmmeMemoRadiSam system protein A
36ATC_RS052301050265..1051065 [-], 801AmmeMemoRadiSam system protein B
37ATC_RS052351051192..1052340 [+], 1149AmmeMemoRadiSam system radical SAM enzyme
38ATC_RS163001052486..1052704 [-], 219hypothetical protein
39ATC_RS163051053068..1053592 [-], 525alkyl hydroperoxide reductase
40ATC_RS052451053648..1055750 [-], 2103glucan 1,4-alpha-glucosidase
41ATC_RS052501055747..1056217 [-], 471MerR family transcriptional regulator
42ATC_RS052551056214..1056870 [-], 657organomercurial lyase
43ATC_RS052601056887..1058551 [-], 1665mercury(II) reductase
44ATC_RS052651058673..1059017 [-], 345heavy-metal-associated domain-containing protein
45ATC_RS052701059057..1059482 [-], 426mercury transporter MerT
46ATC_RS163101059710..1059931 [+], 222hypothetical protein
47ATC_RS163151059935..1060408 [+], 474MerR family transcriptional regulator
48ATC_RS052801060340..1060651 [-], 312hypothetical protein
49ATC_RS052851060641..1062203 [-], 1563IS66 family transposase
50ATC_RS052901062212..1062592 [-], 381IS66 family insertion sequence hypothetical protein
51ATC_RS052951062595..1062891 [-], 297hypothetical protein
52ATC_RS053001063147..1063932 [-], 786ATP-binding protein
53ATC_RS053051063941..1065464 [-], 1524IS21 family transposase
54ATC_RS053101065696..1066400 [+], 705hypothetical protein
55ATC_RS053151066639..1068555 [-], 1917protein-disulfide reductase DsbD
56ATC_RS053201068539..1069156 [-], 618disulfide isomerase
57ATC_RS053251069170..1069520 [-], 351hypothetical protein
58ATC_RS053301069861..1070457 [-], 597DNA-directed RNA polymerase sigma-70 factor
59ATC_RS053351070454..1071167 [-], 714DUF2063 domain-containing protein
60ATC_RS053401071160..1072044 [-], 885DUF692 domain-containing protein
61ATC_RS053451072149..1072436 [-], 288DUF2282 domain-containing protein
62ATC_RS053501072700..1073914 [-], 1215ISL3 family transposase
63ATC_RS053551073962..1074294 [-], 333DoxX family protein
64ATC_RS053601074305..1074586 [-], 282DUF2282 domain-containing protein
65ATC_RS053651074695..1075804 [-], 1110ABC-2 transporter permease
66ATC_RS053701075804..1076919 [-], 1116ABC transporter permease
67ATC_RS053751076916..1078613 [-], 1698ABC transporter ATP-binding protein
68ATC_RS053801078648..1079682 [-], 1035HlyD family efflux transporter periplasmic adaptor subunit
69ATC_RS053851079709..1081028 [-], 1320channel protein TolC
70ATC_RS163201081402..1081695 [-], 294DUF2282 domain-containing protein
71ATC_RS053901081762..1082157 [-], 396heavy metal-responsive transcriptional regulator
72ATC_RS159551082162..1083472 [-], 1311cytochrome c biogenesis protein, transmembrane region
73ATC_RS054001083447..1083743 [-], 297thioredoxin/glutaredoxin
74ATC_RS054151087982..1088974 [-], 9932-hydroxyacid dehydrogenase
75ATC_RS054201089639..1092044 [-], 2406DUF2309 domain-containing protein
76ATC_RS054251092041..1093735 [-], 1695NADH dehydrogenase subunit 5
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins69Fasta
(1) Acuna LG; Cardenas JP; Covarrubias PC; Haristoy JJ; Flores R; Nunez H; Riadi G; Shmaryahu A; Valdes J; Dopson M; Rawlings DE; Banfield JF; Holmes DS; Quatrini R (2013). Architecture and gene repertoire of the flexible genome of the extreme acidophile Acidithiobacillus caldus. PLoS One. 8(11):e78237. [PudMed:24250794] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU