 ICEberg ID | 129_CIME |
| Name | CIME_H36B_tRNALys  |
| Family | - |
| Organism | Streptococcus agalactiae H36B |
| Size (bp) | |
| GC content [Genome] (%) | |
| Insertion site | tRNALys |
| Function | - |
| Species that CIME can be transferred to | - |
| Nucleotide Sequence | AAJS01000002; AAJS01000192; AAJS01000207; AAJS01000210; AAJS01000134; AAJS01000136 (partical CIME sequence) |
The graph information of CIME_H36B_tRNALys components from AAJS01000002 | |||||
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| Incomplete gene list of CIME_H36B_tRNALys from AAJS01000002 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product | *Reannotation  | |
| 1 | SAI_2055 | 157..303 [-], 147 | hypothetical protein | ||
| 2 | SAI_2054 | 358..648 [-], 291 | Unknown | ||
| 3 | SAI_2053 | 1089..1217 [-], 129 | Unknown | ||
| 4 | SAI_2052 | 2651..2983 [+], 333 | Unknown | ||
| 5 | SAI_2051 | 2985..3557 [+], 573 | Unknown | ||
| 6 | SAI_2050 | 3664..4050 [+], 387 | protein of unknown function, putative | ||
| 7 | SAI_2049 | 4047..4325 [+], 279 | conserved hypothetical protein | ||
| 8 | SAI_2048 | 4319..4828 [+], 510 | Unknown | Integrase | |
| 9 | SAI_2047 | 5008..5202 [+], 195 | hypothetical protein | ||
| 10 | SAI_2046 | 5121..6389 [-], 1269 | ATPase, AAA family | ||
| 11 | SAI_2045 | 6382..6963 [-], 582 | acetyltransferase, GNAT family | ||
| 12 | SAI_2044 | 7199..7669 [+], 471 | conserved hypothetical protein | ||
| 13 | SAI_2043 | 7712..8020 [+], 309 | conserved hypothetical protein | ||
| 14 | SAI_2042 | 8013..8471 [+], 459 | MutT/nudix family protein | ||
| 15 | SAI_2041 | 8443..8913 [+], 471 | acetyltransferase, GNAT family | ||
| 16 | SAI_2040 | 8952..9668 [-], 717 | transcriptional regulator, MerR family | ||
The graph information of CIME_H36B_tRNALys components from AAJS01000192 | |||||
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| Incomplete gene list of CIME_H36B_tRNALys from AAJS01000192 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product | *Reannotation | |
| 1 | SAI_2056 | 179..487 [-], 309 | response regulator | ||
The graph information of CIME_H36B_tRNALys components from AAJS01000207 | |||||
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| Incomplete gene list of CIME_H36B_tRNALys from AAJS01000207 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product | *Reannotation | |
| 1 | SAI_2057 | 1..497 [-], 497 | sugar ABC transporter, ATP-binding protein | ||
The graph information of CIME_H36B_tRNALys components from AAJS01000210 | |||||
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| Incomplete gene list of CIME_H36B_tRNALys from AAJS01000210 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product | *Reannotation | |
| 1 | relA | 104..649 [-], 546 | GTP pyrophosphokinase family protein | ||
The graph information of CIME_H36B_tRNALys components from AAJS01000134 | |||||
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| Incomplete gene list of CIME_H36B_tRNALys from AAJS01000134 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product | *Reannotation | |
| 1 | SAI_2061 | 171..554 [+], 384 | degenerate transposase (orf1) | ||
| 2 | SAI_2060 | 587..976 [+], 390 | Transposase (IS4 family) | ||
| 3 | SAI_2059 | 1248..1388 [-], 141 | Holliday junction DNA helicase RuvA | ||
The graph information of CIME_H36B_tRNALys components from AAJS01000136 | |||||
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| Incomplete gene list of CIME_H36B_tRNALys from AAJS01000136 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product | *Reannotation | |
| 1 | SAI_2063 | 200..817 [-], 618 | ABC transporter, ATP-binding protein | ||
| 2 | SAI_2064 | 875..985 [-], 111 | conserved hypothetical protein | ||
 Flanking regions |
 Gene may contribute to site-specific recombination |
(1) Brochet M; Couve E; Glaser P; Guedon G; Payot S (2008). Integrative conjugative elements and related elements are major contributors to the genome diversity of Streptococcus agalactiae. J Bacteriol. 190(20):6913-7. [PudMed:18708498] 
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| experimental literature |
| in silico analysis literature |