ICEberg
I. Information of ICE
ICEberg ID403
Name CTn7 This is a predicted ICE derived from literature
OrganismClostridium difficile 630
Size (bp)25860
GC content [Genome] (%)40.61
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAM180355 (complete ICE sequence in this genome)
Replicon chromosome (4290252 bp, BioProject:78) [NC_009089]
Genome coordinates3938102..3963961 
Putative oriT region -
Putative relaxase coordinates: 3960451..3961641; Locus tag: CD630_33880;  Family:  MOBT


II. ICE interaction with IME/CIME/

The interaction information of CTn7 is not available.



The graph information of CTn7 components from AM180355
Complete gene list of CTn7 from AM180355
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1CD630_336803933977..3935035 [-], 1059putative ribosome biogenesis GTPase RsgA; putative EngC-like GTPase
2CD630_336813935041..3935442 [-], 402putative zinc finger protein
3CD630_336823936389..3936565 [+], 177conserved hypothetical protein
4CD630_336903936975..3937613 [+], 639conserved hypothetical protein
5CD630_337003938102..3939862 [-], 1761putative recombinase Tn916-like, CTn7-Orf1Integrase 
6CD630_337013940387..3940626 [-], 240putative conjugative transposon protein Tn916-like, CTn7-Orf2
7CD630_337103940631..3941047 [-], 417putative conjugative transposon protein Tn916-like, CTn7-Orf3
8CD630_337203941044..3941403 [-], 360putative conjugative transposon protein Tn916-like, CTn7-Orf4
9CD630_337213941659..3941823 [-], 165putative conjugative transposon protein Tn916-like, CTn7-Orf5
10CD630_337223942394..3942564 [-], 171putative conjugative transposon protein Tn916-like, CTn7-Orf6
11mgtA3942574..3945339 [-], 2766Magnesium-transporting ATPase, P-type 1; Tn916-like, CTn7-Orf7
12CD630_337403945505..3945816 [-], 312putative conjugative transposon protein Tn916-like, CTn7-Orf8
13CD630_337413945832..3946062 [-], 231putative conjugative transposon protein Tn916-like, CTn7-Orf9
14mgtC3946063..3946740 [-], 678Magnesium-transporting ATPase protein C; Tn916-like, CTn7-Orf10
15CD630_337603946878..3947381 [-], 504putative transcriptional regulator Tn916-like,CTn7-Orf11
16mgtA3947397..3950060 [-], 2664Magnesium-transporting ATPase, P-type 1; Tn916-like, CTn7-Orf12
17CD630_337803950153..3950362 [-], 210putative conjugative transposon protein Tn916-like, CTn7-Orf13
18CD630_337813950429..3950653 [+], 225Fragment of putative transcriptional regulator Tn916-like, CTn7-Orf14 (Central region)
19CD630_337903950845..3951747 [-], 903putative conjugative transposon protein Tn916-like, CTn7-Orf15Orf13_Tn, T4SS component 
20CD630_338003951764..3952771 [-], 1008putative cell wall hydrolase Tn916-like,CTn7-Orf16Orf14_Tn, T4SS component 
21CD630_338103952768..3954969 [-], 2202Fragment of putative membrane protein Tn916-like, CTn7-orf17
22CD630_338303954969..3957419 [-], 2451putative ATPase Tn916-like, CTn7-Orf19Orf16_Tn, T4SS component 
23CD630_338403957397..3957795 [-], 399putative conjugative transposon protein Tn916-like, CTn7-Orf20Orf17_Tn, T4SS component 
24CD630_338503957913..3958416 [-], 504putative antirestriction protein Tn916-like,CTn7-Orf21
25CD630_338603958434..3958937 [-], 504putative antirestriction protein Tn916-like,CTn7-Orf22
26CD630_338613958856..3959152 [-], 297putative conjugative transposon protein Tn916-like, CTn7-Orf23
27CD630_338703959235..3960044 [-], 810putative conjugative transposon protein Tn916-like, CTn7-Orf24
28CD630_338713960083..3960304 [-], 222putative conjugative transposon protein Tn916-like, CTn7-Orf25Orf19_Tn, T4SS component 
29CD630_338723960305..3960367 [-], 63Fragment of conjugative transposon protein Tn916-like, CTn7-Orf26 (C-terminal region)
30CD630_338803960451..3961641 [-], 1191putative replication initiation factor Tn916-like, CTn7-Orf27Relaxase, MOBT Family
31CD630_338903961825..3963219 [-], 1395putative cell-division FtsK/SpoIIIE-family protein Tn916-like, CTn7-Orf28Orf21_Tn, T4SS component 
32CD630_339003963236..3963619 [-], 384putative conjugative transposon protein DUF961 family Tn196-like, CTn7-Orf29
33CD630_339103963635..3963961 [-], 327putative conjugative transposon protein DUF961 family Tn916-like, CTn7-Orf30
34CD630_339113963993..3964187 [-], 195conserved hypothetical protein
35CD630_339203964200..3967244 [-], 3045putative cell surface protein
36rumA3967487..3968851 [-], 136523S rRNA (uracil-5-)-methyltransferase RumA (23S rRNA(M-5-U1939)-methyltransferase)
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins26Fasta
(1) Sebaihia M; Wren BW; Mullany P; Fairweather NF; Minton N; Stabler R; Thomson NR; Roberts AP; Cerdeno-Tarraga AM; Wang H; Holden MT; Wright A; Churcher C; Quail MA; Baker S; Bason N; Brooks K; Chillingworth T; Cronin A; Davis P; Dowd L; Fraser A; Feltwell T; Hance Z; Holroyd S; Jagels K; Moule S; Mungall K; Price C; Rabbinowitsch E; Sharp S; Simmonds M; Stevens K; Unwin L; Whithead S; Dupuy B; Dougan G; Barrell B; Parkhill J (2006). The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome. Nat Genet. 38(7):779-86. [PubMed:16804543]
 

Genomics & Bioinformatics Group in MML, SJTU