ICEberg
I. Information of ICE
ICEberg ID396
Name ICEHpyP12-1 This ICE is derived from experimental literature
ICEO ID ICEO_0000169
OrganismHelicobacter pylori P12
Size (bp)42705
GC content [Genome] (%)33.95[38.81]
Insertion sitetype I R-M system R protein (HPP12_0436)
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP001217 (complete ICE sequence in this genome)
Replicon chromosome (1673813 bp, BioProject:32291) [NC_011498]
Genome coordinates451991..494695 
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICEHpyP12-1 is not available.



The graph information of ICEHpyP12-1 components from CP001217
Complete gene list of ICEHpyP12-1 from CP001217
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1hsdS-1448002..449183 [-], 1182type I R-M system S protein
2hsdM-1449176..450807 [-], 1632type I R-M system M protein
3HPP12_0437452423..453496 [+], 1074integrase/recombinase XercD familyIntegrase 
4HPP12_0438453578..454261 [-], 684hypothetical protein
5virb6454334..455632 [-], 1299VirB6 type IV secretion protein
6HPP12_0440455598..455876 [-], 279hypothetical protein
7HPP12_0441455928..457328 [-], 1401hypothetical protein
8HPP12_0442457332..457577 [-], 246hypothetical protein
9HPP12_0443457791..459272 [-], 1482hypothetical protein
10HPP12_0444459405..460469 [-], 1065hypothetical protein
11HPP12_0445460312..460803 [-], 492hypothetical protein
12HPP12_0446460810..461832 [-], 1023hypothetical protein
13HPP12_0447462096..470522 [+], 8427DNA methylase
14parA470785..471441 [+], 657chromosome partitioning protein
15HPP12_0449471523..471807 [+], 285hypothetical protein
16HPP12_0450471839..473017 [+], 1179hypothetical protein
17virD2-1473042..474955 [-], 1914relaxase
18HPP12_0452475253..475567 [+], 315hypothetical protein
19HPP12_0453475560..475841 [+], 282hypothetical protein
20virD4-1476105..477832 [-], 1728VirD4 coupling proteinT4CP 
21HPP12_0455477879..478391 [-], 513hypothetical protein
22HPP12_0456478392..478682 [-], 291hypothetical protein
23HPP12_0457478679..479134 [-], 456hypothetical protein
24virB11-1479131..480072 [-], 942VirB11 type IV secretion ATPaseVirB11, T4SS component 
25HPP12_0459480072..480371 [-], 300hypothetical protein
26HPP12_0460480368..480631 [-], 264hypothetical protein
27HPP12_0461480624..480917 [-], 294hypothetical protein
28virB10-1480987..482252 [-], 1266VirB10 type IV secretion proteinVirB10, T4SS component 
29virB9-1482252..483784 [-], 1533VirB9 type IV secretion proteinVirB9, T4SS component 
30virB8-1483784..484953 [-], 1170VirB8 type IV secretion proteinVirB8, T4SS component 
31virB7-1484957..485073 [-], 117VirB7 type IV secretion proteinVirB7, T4SS component 
32virB3-1489522..489788 [-], 267VirB3 type IV secretion proteinVirB3, T4SS component 
33virB2-1489789..490091 [-], 303VirB2 type IV secretion proteinVirB2, T4SS component 
34HPP12_0470490088..490372 [-], 285hypothetical protein
35HPP12_0471490433..491611 [-], 1179hypothetical protein
36HPP12_0472491618..491911 [-], 294hypothetical protein
37HPP12_0473491931..492710 [-], 780hypothetical protein
38HPP12_0474494743..496638 [-], 1896hypothetical protein
39HPP12_0475496664..497431 [-], 768hypothetical protein
40HPP12_0476497441..497791 [-], 351integral membrane protein
41HPP12_0477497757..499244 [-], 1488hypothetical protein
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins35Fasta
(1) Fischer W; Windhager L; Rohrer S; Zeiller M; Karnholz A; Hoffmann R; Zimmer R; Haas R (2010). Strain-specific genes of Helicobacter pylori: genome evolution driven by a novel type IV secretion system and genomic island transfer. Nucleic Acids Res. 38(18):6089-101. [PubMed:20478826]
 

Genomics & Bioinformatics Group in MML, SJTU