ICEberg
I. Information of ICE
ICEberg ID375
Name ICEPm1 This ICE is derived from experimental literature
ICEO ID ICEO_0000167
OrganismProteus mirabilis HI4320
Size (bp)92463
GC content [Genome] (%)44.85[38.9]
Insertion sitetRNA-Phe (PMIt057)
FunctionProteus toxic agglutinin
Species that ICE can be transferred to-
Nucleotide SequenceAM942759 (complete ICE sequence in this genome)
Replicon chromosome (4063606 bp, BioProject:12624) [NC_010554]
Genome coordinates2793762..2886224 
Putative oriT region -
Putative relaxase coordinates: 2795085..2796677; Locus tag: PMI2550;  Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of ICEPm1 is not available.



The graph information of ICEPm1 components from AM942759
Complete gene list of ICEPm1 from AM942759
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1fxsA2788843..2789349 [-], 507membrane protein FxsA (suppressor of F exclusion of phage T7)
2aspA2789722..2791146 [+], 1425aspartate ammonia-lyase
3dcuA2791305..2792630 [+], 1326anaerobic C4-dicarboxylate transporter
4PMI25482792823..2793395 [+], 573conserved hypothetical protein
5PMI25492793999..2795069 [-], 1071putative phage integraseIntegrase 
6PMI25502795085..2796677 [-], 1593putative helicaseRelaxase, MOBH Family
7PMI25512796853..2797179 [-], 327putative membrane protein
8PMI25522797323..2798324 [-], 1002putative plasmid-related protein
9PMI25532798409..2798708 [-], 300conserved hypothetical protein
10PMI25542798718..2799692 [-], 975putative DNA primase
11PMI25552799845..2800492 [-], 648hypothetical protein
12PMI25562800492..2801004 [-], 513hypothetical protein
13PMI25572801115..2801471 [-], 357conserved hypothetical protein
14PMI25582801568..2801990 [-], 423hypothetical protein
15PMI25592802157..2802534 [-], 378hypothetical protein
16PMI25602802556..2802831 [-], 276hypothetical protein
17PMI25612802881..2803075 [-], 195hypothetical protein
18PMI25622803142..2803270 [-], 129hypothetical protein
19PMI25632803267..2803878 [-], 612putative exported protein
20PMI25642803886..2804794 [-], 909conserved hypothetical protein
21PMI25652804931..2805110 [-], 180hypothetical protein
22PMI25662805195..2805416 [+], 222hypothetical protein
23PMI25672805837..2806076 [-], 240conserved hypothetical protein
24PMI25682806076..2806375 [-], 300hypothetical protein
25PMI25692806718..2807125 [+], 408putative membrane protein
26PMI25702807168..2808679 [-], 1512putative membrane proteinTfc19, T4SS component 
27PMI25712808679..2809017 [-], 339putative membrane protein
28PMI25722809018..2810457 [-], 1440putative exported proteinTfc22, T4SS component 
29PMI25732810475..2811449 [-], 975putative exported proteinTfc23, T4SS component 
30PMI25742811446..2811886 [-], 441putative lipoproteinTfc24, T4SS component 
31PMI25752811965..2814190 [-], 2226putative adhesin
32PMI25762814285..2817152 [-], 2868conserved hypothetical proteinTfc16, T4SS component 
33PMI25772817152..2817589 [-], 438putative lipoproteinTfc15, T4SS component 
34PMI25782817586..2818071 [-], 486hypothetical protein
35PMI25792818068..2819564 [-], 1497putative exported proteinTfc14, T4SS component 
36PMI25802819561..2820457 [-], 897putative exported proteinTfc13, T4SS component 
37PMI25812820454..2821098 [-], 645putative exported proteinTfc12, T4SS component 
38PMI25822821091..2821507 [-], 417putative membrane proteinTfc11, T4SS component 
39PMI25832821520..2821933 [-], 414putative membrane proteinTfc10, T4SS component 
40PMI25842821930..2822169 [-], 240putative membrane protein
41PMI25852822166..2822492 [-], 327putative exported proteinTfc9, T4SS component 
42PMI25862822639..2823247 [+], 609conserved hypothetical protein
43PMI25872823335..2824084 [-], 750putative membrane proteinTfc8, T4SS component 
44PMI25882824071..2826218 [-], 2148putative plasmid transfer proteinTfc6, T4SS component 
45PMI25892826377..2826574 [-], 198putative subunit of ATP synthase
46PMI25902826574..2827128 [-], 555putative exported proteinTfc5, T4SS component 
47PMI25912827118..2827756 [-], 639putative lytic transglycosylaseTfc4, T4SS component 
48PMI25922827769..2828506 [-], 738putative exported proteinTfc3, T4SS component 
49PMI25932828517..2829257 [-], 741putative membrane proteinTfc2, T4SS component 
50PMI25942829254..2829916 [-], 663putative conjugal transfer proteinTfc2, T4SS component 
51PMI25952830088..2830525 [-], 438IS1004 transposase (pseudogene)
52PMI25962830683..2832671 [-], 1989putative siderophore TonB-dependent receptor
53PMI25972832928..2834157 [+], 1230MFS-family transporter
54PMI25982834189..2834926 [+], 738conserved hypothetical protein
55PMI25992834947..2841051 [+], 6105putative non-ribosomal peptide synthase (putative siderophore synthase)
56nrpS2841064..2850279 [+], 9216putative non-ribosomal peptide synthase (putative siderophore synthase)
57nrpU2850279..2851367 [+], 1089putative siderophore biosynthetic protein
58nrpT2851367..2852140 [+], 774putative siderophore biosynthetic protein (thioesterase)
59nrpA2852159..2853925 [+], 1767putative siderophore ABC transporter, ATP-binding/permease protein
60nrpB2853918..2855645 [+], 1728putative siderophore ABC transporter, ATP-binding/permease protein
61nrpG2855658..2856407 [+], 750putative 4'-phosphopantetheinyl transferase
62irpP2856577..2856921 [+], 345conserved hypothetical protein (pseudogene)
63PMI26072857189..2857497 [+], 309conserved hypothetical protein (fragment)
64PMI26082857629..2857817 [+], 189putative prophage regulatory protein
65PMI26092857842..2857976 [+], 135conserved hypothetical protein (fragment)
66insN2857976..2858278 [+], 303transposase for insertion sequence element IS911
67PMI26112858305..2860431 [+], 2127putative transposase (pseudogene)
68PMI26122859139..2860203 [+], 1065putative transposase
69PMI26142860495..2860599 [+], 105conserved hypothetical protein (fragment)
70PMI26152860952..2861873 [-], 922antirestriction protein (pseudogene)
71PMI26182862321..2864690 [-], 2370TonB-dependent receptor
72PMI26192864701..2866794 [-], 2094TonB-dependent receptor
73PMI26202867161..2867442 [+], 282transposase (fragment)
74PMI26212868101..2868304 [-], 204putative membrane protein (fragment)
75PMI26222868303..2868461 [-], 159fimbrial usher protein (fragment)
76PMI26232868545..2869268 [-], 724fimbrial chaperone chaperone (pseudogene)
77PMI26242869343..2869753 [-], 411fimbrial subunit (fragment)
78PMI26252870969..2871232 [+], 264ornithine decarboxylase (fragment)
79PMI26262871244..2871662 [-], 419putative exported protein (fragment)
80PMI26272872070..2872993 [-], 924putative transposase
81PMI26282873014..2873481 [-], 468conserved hypothetical protein
82PMI26292873465..2873671 [-], 207hypothetical protein
83PMI26302874365..2876419 [-], 2055topoisomerase
84PMI26312876429..2876965 [-], 537putative lipoprotein
85PMI26322877013..2877717 [-], 705conserved hypothetical protein
86PMI26332878000..2878518 [+], 519conserved hypothetical protein
87PMI26342878555..2878716 [+], 162hypothetical protein
88PMI26352878804..2880099 [-], 1296conserved hypothetical protein
89PMI26362880226..2880510 [-], 285conserved hypothetical protein
90PMI26372880500..2881090 [-], 591conserved hypothetical protein
91PMI26382881005..2881517 [-], 513hypothetical protein
92PMI26392881615..2883264 [-], 1650conserved hypothetical protein
93PMI26402883279..2884631 [-], 1353DNA helicase
94PMI26412884624..2885355 [-], 732conserved hypothetical protein
95PMI26422885352..2886224 [-], 873chromosome partitioning related protein
96PMI26432886551..2886685 [-], 135putative integrase (fragment)
97PMI26442886711..2887889 [-], 1179putative membrane protein
98PMI26452887886..2888482 [-], 597putative membrane protein
99PMI26462888961..2889590 [+], 630putative membrane protein
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins77Fasta
(1) Flannery EL; Antczak SM; Mobley HL (2011). Self-Transmissibility of the Integrative and Conjugative Element ICEPm1 between Clinical Isolates Requires a Functional Integrase, Relaxase, and Type IV Secretion System. J Bacteriol. 193(16):4104-12. [PubMed:21665966] experimental
(2) Flannery EL; Mody L; Mobley HL (2009). Identification of a modular pathogenicity island that is widespread among urease-producing uropathogens and shares features with a diverse group of mobile elements. Infect Immun. 77(11):4887-94. [PubMed:19687197] experimental
 
experimental experimental literature

Genomics & Bioinformatics Group in MML, SJTU