ICEberg
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ICE family: ICE6013
ICE6013 was characterized by Smyth et al. ICEs in ICE6013 family are defined by the following structure based on the figure from Smyth et al.


#IDICE nameStrainReplicon
168 experimental ICE6013Staphylococcus aureus HDG2-
2153 in_silico ICESauTW20-1Staphylococcus aureus subsp. aureus TW20
3154 in_silico ICESauT0131-1Staphylococcus aureus subsp. aureus T0131
4155 in_silico ICESauJKD6008-1Staphylococcus aureus subsp. aureus str. JKD6008
5351 in_silico ICESauTCH1516-1Staphylococcus aureus subsp. aureus USA300_TCH1516NC_010079
6352 in_silico ICESauFPR3757-1Staphylococcus aureus subsp. aureus USA300_FPR3757NC_007793
7353 in_silico ICESauED98-1Staphylococcus aureus subsp. aureus ED98NC_013450
8354 in_silico ICESa1Staphylococcus aureus subsp. aureus ST398AM990992
9355 in_silico ICESa2Staphylococcus aureus subsp. aureus ST398AM990992
10356 in_silico ICESauST398-4Staphylococcus aureus subsp. aureus ST398AM990992
11357 in_silico ICESauMRSA252-1Staphylococcus aureus subsp. aureus MRSA252NC_002952
12358 experimental Tn6012Staphylococcus aureus JCSC6826-
13359 in_silico ICESauCOL-1Staphylococcus aureus subsp. aureus COLNC_002951
experimental Data derived from experimental literature
in_silico Putative ICEs predicted by bioinformatic methods
(1) Schijffelen MJ et al. (2010). Whole genome analysis of a livestock-associated methicillin-resistant Staphylococcus aureus ST398 isolate from a case of human endocarditis. BMC Genomics. 0.719444444. [PudMed:20546576]
(2) Smyth DS et al. (2009). Integrative and sequence characteristics of a novel genetic element, ICE6013, in Staphylococcus aureus. J Bacteriol. 191(19):5964-75. [PudMed:19648240] experimental
(3) Han X et al. (2009). Identification of a novel variant of staphylococcal cassette chromosome mec, type II.5, and Its truncated form by insertion of putative conjugative transposon Tn6012. Antimicrob Agents Chemother. 53(6):2616-9. [PudMed:19364875] in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU