# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /var/www/html/oriTDB2/hmmer/lE0z9HWmuP/sequence.fasta # target HMM database: /var/www/html/oriTDB2/download/hmmdb/T4CP_3.hmm # output directed to file: /var/www/html/oriTDB2/hmmer/lE0z9HWmuP/result_t4cp.hmmscan # per-seq hits tabular output: /var/www/html/oriTDB2/hmmer/lE0z9HWmuP/result_t4cp.tbl # profile reporting threshold: E-value <= 0.001 # number of worker threads: 4 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Protein_1 [L=732] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (732 residues searched) Target model(s): 3 (796 nodes) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 3 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // Query: Protein_2 [L=732] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (732 residues searched) Target model(s): 3 (796 nodes) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 3 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // Query: Protein_3 [L=635] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.9e-70 222.4 0.0 9.1e-70 222.0 0.0 1.1 1 t4cp2 1.9e-30 93.7 0.0 3.8e-30 92.7 0.0 1.5 1 t4cp1 Domain annotation for each model (and alignments): >> t4cp2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 222.0 0.0 6e-70 9.1e-70 1 221 [. 359 600 .. 359 601 .. 0.93 Alignments for each domain: == domain 1 score: 222.0 bits; conditional E-value: 6e-70 t4cp2 1 ilstatqglklltdpeiakatsksdfdlkdvik..kpvalyivlpaedlaslrplaslfisqlinalakla....pekkkklkrpvlfllDEfgnlgkie 94 +lsta+++l+l++dp +a+++sksdf +k++++ +pv+l+iv++++d+a+lrpl+++++++++++la+++ +++ +++k+++l++lDEf++lgk+e Protein_3 359 VLSTAKSYLALYRDPVVARNVSKSDFRIKQLMHhdDPVSLFIVTQPNDKARLRPLVRVMVNMIVRLLADKMdfenGRPVAHYKHRLLMMLDEFPSLGKLE 458 699********************************************************************88887799********************* PP t4cp2 95 gleealavargrgirfiliiQslsqlekl...ygkegaetilgNcnnkiyirtndeetaeeiskllGektvkv.....kssssssglgersgtsrteseq 186 +l+e+la+++g+gi+++li+Q+++ql+++ yg++ e+i++Nc+++ ++++n++etae++skl+G++t+++ + +++s+ ++srt +e+ Protein_3 459 ILQESLAFVAGYGIKCYLICQDINQLKSRetgYGHD--ESITSNCHVQNAYPPNRVETAEHLSKLTGTTTIVKeqittSGRRTSAL---LGNVSRTFQEV 553 ****************************9999**99..88*********************************4433223333344...456******** PP t4cp2 187 qrplltpdelkrLpe............geaivlragaypilagkip.y 221 qrplltpde++r+p+ g+++v++ag yp+++gk+p y Protein_3 554 QRPLLTPDECLRMPGpkksadgsieeaGDMVVYVAG-YPAIYGKQPlY 600 *************99999999999999*********.********966 PP >> t4cp1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 92.7 0.0 2.5e-30 3.8e-30 1 110 [] 186 295 .. 186 295 .. 0.94 Alignments for each domain: == domain 1 score: 92.7 bits; conditional E-value: 2.5e-30 t4cp1 1 GKtvglvipnllkwrgsvivlDpkgelyeatagyr..agrgdkvlvlnpgdeaeshrwnpldyirdrsaeragdlaslanslipaekggggdaffkesar 98 GK+vglv+p+ll+w +s++++D kgel++ tag+r + +kv+++ p++ + s++wnpld+ir +++++gd+++la++++++ +g+g + +++++++ Protein_3 186 GKGVGLVVPTLLSWAHSAVITDLKGELWALTAGWRkkHA-RNKVVRFEPASAQGSACWNPLDEIRLGTEYEVGDVQNLATLIVDP-DGKGLESHWQKTSQ 283 9**********************************6444.579********999**********6666*****************.669*********** PP t4cp1 99 qllaalilalld 110 +ll ++il++l+ Protein_3 284 ALLVGVILHALY 295 *********986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (635 residues searched) Target model(s): 3 (796 nodes) Passed MSV filter: 2 (0.666667); expected 0.1 (0.02) Passed bias filter: 2 (0.666667); expected 0.1 (0.02) Passed Vit filter: 2 (0.666667); expected 0.0 (0.001) Passed Fwd filter: 2 (0.666667); expected 0.0 (1e-05) Initial search space (Z): 3 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 50.55 // [ok]