# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /var/www/html/oriTDB2/hmmer/lE0z9HWmuP/sequence.fasta # target HMM database: /var/www/html/oriTDB2/download/hmmdb/relaxase_MOB.hmm # output directed to file: /var/www/html/oriTDB2/hmmer/lE0z9HWmuP/result_relaxase.hmmscan # per-seq hits tabular output: /var/www/html/oriTDB2/hmmer/lE0z9HWmuP/result_relaxase.tbl # profile reporting threshold: E-value <= 0.001 # number of worker threads: 4 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Protein_1 [L=732] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.7e-70 225.3 0.2 4.7e-70 225.3 0.2 1.8 2 Relaxase Relaxase/Mobilisation nuclease domain 2.3e-08 22.7 0.2 5e-08 21.6 0.2 1.6 1 MobL MobL relaxases Domain annotation for each model (and alignments): >> Relaxase Relaxase/Mobilisation nuclease domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 225.3 0.2 9.4e-71 4.7e-70 1 240 [. 12 250 .. 12 252 .. 0.98 2 ? -2.8 0.6 0.43 2.2 124 166 .. 338 379 .. 331 403 .. 0.63 Alignments for each domain: == domain 1 score: 225.3 bits; conditional E-value: 9.4e-71 Relaxase 1 nksslsalvnYalnqdkkdkvlravektglnvldvdkaksefkatrelydkvdkdqvhhiiqSFspge.ltpeqineigrelakklgpgnhqyavatHvD 99 +ks++++lv+Y++++ k+++l++v++t++++++ ++++e++at++ ++++++d+++h+ +SF++ge +++e++++i+++++++lg+++hq+++a+H+D Protein_1 12 KKSDFAELVKYITDEQGKTERLGHVRVTNCEANTLPAVMAEVMATQHGNTRSEADKTYHLLVSFRAGEkPDAETLRAIEDRICAGLGFAEHQRVSAVHHD 111 589***********755***************************************************9999**************************** PP Relaxase 100 kdhlHnHiviNrvnletgkkfrenkeayrklrkvndelasreglsideksprnrqseaekekae...knkssykeeirqalkkalenasdfedlkealke 196 +d+lH+Hi+iN++++++++++++++ ayr+l++ +++l++++gl++d++++r+r se++++++e + +s++ +++r++l ++++ a+++edl++ l+e Protein_1 112 TDNLHIHIAINKIHPTRNTIHEPYR-AYRALADLCATLERDYGLERDNHETRQRVSENRANDMErhaGVESLVGWIKRECLPELQA-AQSWEDLHRVLRE 209 *************************.*****************************************9*****************9.************* PP Relaxase 197 kglelrrktgkkltykltdenqkkvrgsklgkdyqkeklekrle 240 +gl+lr+++++++++++++ ++v++s++++d++k+kle+r++ Protein_1 210 NGLKLRERGNGFIFEAGDG---TTVKASTVSRDLSKPKLEARFG 250 *******************...88******************98 PP == domain 2 score: -2.8 bits; conditional E-value: 0.43 Relaxase 124 k.eayrklrkvndelasreglsideksprnrqseaekekaeknk 166 + +a+++lr d++ ++++ + + ++r +++ ++++ k + Protein_1 338 YaQAHKALRADLDKINREYRQGRQAV--QERTQRRAWADWLKAE 379 44678888888888888888877777..4444555555555322 PP >> MobL MobL relaxases # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.6 0.2 1e-08 5e-08 148 185 .. 105 140 .. 84 201 .. 0.84 Alignments for each domain: == domain 1 score: 21.6 bits; conditional E-value: 1e-08 MobL 148 vaaihedTdniHvHialvepkptrdlvlvekskltrng 185 v a+h dTdn H+Hia+ +ptr+ +++++ + ++ Protein_1 105 VSAVHHDTDNLHIHIAINKIHPTRN--TIHEPYRAYRA 140 6799*********************..88888666555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (732 residues searched) Target model(s): 10 (2473 nodes) Passed MSV filter: 2 (0.2); expected 0.2 (0.02) Passed bias filter: 2 (0.2); expected 0.2 (0.02) Passed Vit filter: 2 (0.2); expected 0.0 (0.001) Passed Fwd filter: 2 (0.2); expected 0.0 (1e-05) Initial search space (Z): 10 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 181.02 // Query: Protein_2 [L=732] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.7e-70 225.3 0.2 4.7e-70 225.3 0.2 1.8 2 Relaxase Relaxase/Mobilisation nuclease domain 2.3e-08 22.7 0.2 5e-08 21.6 0.2 1.6 1 MobL MobL relaxases Domain annotation for each model (and alignments): >> Relaxase Relaxase/Mobilisation nuclease domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 225.3 0.2 9.4e-71 4.7e-70 1 240 [. 12 250 .. 12 252 .. 0.98 2 ? -2.8 0.6 0.43 2.2 124 166 .. 338 379 .. 331 403 .. 0.63 Alignments for each domain: == domain 1 score: 225.3 bits; conditional E-value: 9.4e-71 Relaxase 1 nksslsalvnYalnqdkkdkvlravektglnvldvdkaksefkatrelydkvdkdqvhhiiqSFspge.ltpeqineigrelakklgpgnhqyavatHvD 99 +ks++++lv+Y++++ k+++l++v++t++++++ ++++e++at++ ++++++d+++h+ +SF++ge +++e++++i+++++++lg+++hq+++a+H+D Protein_2 12 KKSDFAELVKYITDEQGKTERLGHVRVTNCEANTLPAVMAEVMATQHGNTRSEADKTYHLLVSFRAGEkPDAETLRAIEDRICAGLGFAEHQRVSAVHHD 111 589***********755***************************************************9999**************************** PP Relaxase 100 kdhlHnHiviNrvnletgkkfrenkeayrklrkvndelasreglsideksprnrqseaekekae...knkssykeeirqalkkalenasdfedlkealke 196 +d+lH+Hi+iN++++++++++++++ ayr+l++ +++l++++gl++d++++r+r se++++++e + +s++ +++r++l ++++ a+++edl++ l+e Protein_2 112 TDNLHIHIAINKIHPTRNTIHEPYR-AYRALADLCATLERDYGLERDNHETRQRVSENRANDMErhaGVESLVGWIKRECLPELQA-AQSWEDLHRVLRE 209 *************************.*****************************************9*****************9.************* PP Relaxase 197 kglelrrktgkkltykltdenqkkvrgsklgkdyqkeklekrle 240 +gl+lr+++++++++++++ ++v++s++++d++k+kle+r++ Protein_2 210 NGLKLRERGNGFIFEAGDG---TTVKASTVSRDLSKPKLEARFG 250 *******************...88******************98 PP == domain 2 score: -2.8 bits; conditional E-value: 0.43 Relaxase 124 k.eayrklrkvndelasreglsideksprnrqseaekekaeknk 166 + +a+++lr d++ ++++ + + ++r +++ ++++ k + Protein_2 338 YaQAHKALRADLDKINREYRQGRQAV--QERTQRRAWADWLKAE 379 44678888888888888888877777..4444555555555322 PP >> MobL MobL relaxases # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.6 0.2 1e-08 5e-08 148 185 .. 105 140 .. 84 201 .. 0.84 Alignments for each domain: == domain 1 score: 21.6 bits; conditional E-value: 1e-08 MobL 148 vaaihedTdniHvHialvepkptrdlvlvekskltrng 185 v a+h dTdn H+Hia+ +ptr+ +++++ + ++ Protein_2 105 VSAVHHDTDNLHIHIAINKIHPTRN--TIHEPYRAYRA 140 6799*********************..88888666555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (732 residues searched) Target model(s): 10 (2473 nodes) Passed MSV filter: 2 (0.2); expected 0.2 (0.02) Passed bias filter: 2 (0.2); expected 0.2 (0.02) Passed Vit filter: 2 (0.2); expected 0.0 (0.001) Passed Fwd filter: 2 (0.2); expected 0.0 (1e-05) Initial search space (Z): 10 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 181.02 // Query: Protein_3 [L=635] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (635 residues searched) Target model(s): 10 (2473 nodes) Passed MSV filter: 0 (0); expected 0.2 (0.02) Passed bias filter: 0 (0); expected 0.2 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 10 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok]