# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /var/www/html/oriTDB2/hmmer/lE0z9HWmuP/sequence.fasta
# target HMM database: /var/www/html/oriTDB2/download/hmmdb/relaxase_MOB.hmm
# output directed to file: /var/www/html/oriTDB2/hmmer/lE0z9HWmuP/result_relaxase.hmmscan
# per-seq hits tabular output: /var/www/html/oriTDB2/hmmer/lE0z9HWmuP/result_relaxase.tbl
# profile reporting threshold: E-value <= 0.001
# number of worker threads: 4
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Protein_1 [L=732]
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.7e-70 225.3 0.2 4.7e-70 225.3 0.2 1.8 2 Relaxase Relaxase/Mobilisation nuclease domain
2.3e-08 22.7 0.2 5e-08 21.6 0.2 1.6 1 MobL MobL relaxases
Domain annotation for each model (and alignments):
>> Relaxase Relaxase/Mobilisation nuclease domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 225.3 0.2 9.4e-71 4.7e-70 1 240 [. 12 250 .. 12 252 .. 0.98
2 ? -2.8 0.6 0.43 2.2 124 166 .. 338 379 .. 331 403 .. 0.63
Alignments for each domain:
== domain 1 score: 225.3 bits; conditional E-value: 9.4e-71
Relaxase 1 nksslsalvnYalnqdkkdkvlravektglnvldvdkaksefkatrelydkvdkdqvhhiiqSFspge.ltpeqineigrelakklgpgnhqyavatHvD 99
+ks++++lv+Y++++ k+++l++v++t++++++ ++++e++at++ ++++++d+++h+ +SF++ge +++e++++i+++++++lg+++hq+++a+H+D
Protein_1 12 KKSDFAELVKYITDEQGKTERLGHVRVTNCEANTLPAVMAEVMATQHGNTRSEADKTYHLLVSFRAGEkPDAETLRAIEDRICAGLGFAEHQRVSAVHHD 111
589***********755***************************************************9999**************************** PP
Relaxase 100 kdhlHnHiviNrvnletgkkfrenkeayrklrkvndelasreglsideksprnrqseaekekae...knkssykeeirqalkkalenasdfedlkealke 196
+d+lH+Hi+iN++++++++++++++ ayr+l++ +++l++++gl++d++++r+r se++++++e + +s++ +++r++l ++++ a+++edl++ l+e
Protein_1 112 TDNLHIHIAINKIHPTRNTIHEPYR-AYRALADLCATLERDYGLERDNHETRQRVSENRANDMErhaGVESLVGWIKRECLPELQA-AQSWEDLHRVLRE 209
*************************.*****************************************9*****************9.************* PP
Relaxase 197 kglelrrktgkkltykltdenqkkvrgsklgkdyqkeklekrle 240
+gl+lr+++++++++++++ ++v++s++++d++k+kle+r++
Protein_1 210 NGLKLRERGNGFIFEAGDG---TTVKASTVSRDLSKPKLEARFG 250
*******************...88******************98 PP
== domain 2 score: -2.8 bits; conditional E-value: 0.43
Relaxase 124 k.eayrklrkvndelasreglsideksprnrqseaekekaeknk 166
+ +a+++lr d++ ++++ + + ++r +++ ++++ k +
Protein_1 338 YaQAHKALRADLDKINREYRQGRQAV--QERTQRRAWADWLKAE 379
44678888888888888888877777..4444555555555322 PP
>> MobL MobL relaxases
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.6 0.2 1e-08 5e-08 148 185 .. 105 140 .. 84 201 .. 0.84
Alignments for each domain:
== domain 1 score: 21.6 bits; conditional E-value: 1e-08
MobL 148 vaaihedTdniHvHialvepkptrdlvlvekskltrng 185
v a+h dTdn H+Hia+ +ptr+ +++++ + ++
Protein_1 105 VSAVHHDTDNLHIHIAINKIHPTRN--TIHEPYRAYRA 140
6799*********************..88888666555 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (732 residues searched)
Target model(s): 10 (2473 nodes)
Passed MSV filter: 2 (0.2); expected 0.2 (0.02)
Passed bias filter: 2 (0.2); expected 0.2 (0.02)
Passed Vit filter: 2 (0.2); expected 0.0 (0.001)
Passed Fwd filter: 2 (0.2); expected 0.0 (1e-05)
Initial search space (Z): 10 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01
# Mc/sec: 181.02
//
Query: Protein_2 [L=732]
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.7e-70 225.3 0.2 4.7e-70 225.3 0.2 1.8 2 Relaxase Relaxase/Mobilisation nuclease domain
2.3e-08 22.7 0.2 5e-08 21.6 0.2 1.6 1 MobL MobL relaxases
Domain annotation for each model (and alignments):
>> Relaxase Relaxase/Mobilisation nuclease domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 225.3 0.2 9.4e-71 4.7e-70 1 240 [. 12 250 .. 12 252 .. 0.98
2 ? -2.8 0.6 0.43 2.2 124 166 .. 338 379 .. 331 403 .. 0.63
Alignments for each domain:
== domain 1 score: 225.3 bits; conditional E-value: 9.4e-71
Relaxase 1 nksslsalvnYalnqdkkdkvlravektglnvldvdkaksefkatrelydkvdkdqvhhiiqSFspge.ltpeqineigrelakklgpgnhqyavatHvD 99
+ks++++lv+Y++++ k+++l++v++t++++++ ++++e++at++ ++++++d+++h+ +SF++ge +++e++++i+++++++lg+++hq+++a+H+D
Protein_2 12 KKSDFAELVKYITDEQGKTERLGHVRVTNCEANTLPAVMAEVMATQHGNTRSEADKTYHLLVSFRAGEkPDAETLRAIEDRICAGLGFAEHQRVSAVHHD 111
589***********755***************************************************9999**************************** PP
Relaxase 100 kdhlHnHiviNrvnletgkkfrenkeayrklrkvndelasreglsideksprnrqseaekekae...knkssykeeirqalkkalenasdfedlkealke 196
+d+lH+Hi+iN++++++++++++++ ayr+l++ +++l++++gl++d++++r+r se++++++e + +s++ +++r++l ++++ a+++edl++ l+e
Protein_2 112 TDNLHIHIAINKIHPTRNTIHEPYR-AYRALADLCATLERDYGLERDNHETRQRVSENRANDMErhaGVESLVGWIKRECLPELQA-AQSWEDLHRVLRE 209
*************************.*****************************************9*****************9.************* PP
Relaxase 197 kglelrrktgkkltykltdenqkkvrgsklgkdyqkeklekrle 240
+gl+lr+++++++++++++ ++v++s++++d++k+kle+r++
Protein_2 210 NGLKLRERGNGFIFEAGDG---TTVKASTVSRDLSKPKLEARFG 250
*******************...88******************98 PP
== domain 2 score: -2.8 bits; conditional E-value: 0.43
Relaxase 124 k.eayrklrkvndelasreglsideksprnrqseaekekaeknk 166
+ +a+++lr d++ ++++ + + ++r +++ ++++ k +
Protein_2 338 YaQAHKALRADLDKINREYRQGRQAV--QERTQRRAWADWLKAE 379
44678888888888888888877777..4444555555555322 PP
>> MobL MobL relaxases
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.6 0.2 1e-08 5e-08 148 185 .. 105 140 .. 84 201 .. 0.84
Alignments for each domain:
== domain 1 score: 21.6 bits; conditional E-value: 1e-08
MobL 148 vaaihedTdniHvHialvepkptrdlvlvekskltrng 185
v a+h dTdn H+Hia+ +ptr+ +++++ + ++
Protein_2 105 VSAVHHDTDNLHIHIAINKIHPTRN--TIHEPYRAYRA 140
6799*********************..88888666555 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (732 residues searched)
Target model(s): 10 (2473 nodes)
Passed MSV filter: 2 (0.2); expected 0.2 (0.02)
Passed bias filter: 2 (0.2); expected 0.2 (0.02)
Passed Vit filter: 2 (0.2); expected 0.0 (0.001)
Passed Fwd filter: 2 (0.2); expected 0.0 (1e-05)
Initial search space (Z): 10 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01
# Mc/sec: 181.02
//
Query: Protein_3 [L=635]
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (635 residues searched)
Target model(s): 10 (2473 nodes)
Passed MSV filter: 0 (0); expected 0.2 (0.02)
Passed bias filter: 0 (0); expected 0.2 (0.02)
Passed Vit filter: 0 (0); expected 0.0 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 10 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00
# Mc/sec: inf
//
[ok]