Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   116909
Name   oriT_pB in_silico
Organism   Salmonella sp. A29-2
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP083733 (3365..3539 [-], 175 nt)
oriT length   175 nt
IRs (inverted repeats)      101..106, 120..125  (ACAATC..GATTGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 175 nt

>oriT_pB
GTGACTCCTTGCGCGGTGAAAAATCGCATTTTAGCTCGTCACTGGTAGTTTAAAAACTGAGCTGGCATAATGCACGGCATATCACGAAGTGCGCACTTATACAATCTTCACTTCGTTTCGATTGTGTGCGCCCTGCGGGGCTGAAAGAAAACGGCAAAAAGGCATTACGGCAGAA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   10789 GenBank   WP_208207315
Name   mobQ_K8W53_RS23800_pB insolico UniProt ID   _
Length   739 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 739 a.a.        Molecular weight: 84485.74 Da        Isoelectric Point: 8.3340

>WP_208207315.1 MULTISPECIES: MobQ family relaxase [Salmonella]
MAIYHLSMKIISRKNGYSAVASAAYRSGSVIPDDRTGLIHDYTRKRGVDDAVILTPANAPSWCGDRSVLW
NAVEKAEQRRNSQLAREIELAIPREISREAAREAVLAFVRENFVSRGMIADVAFHHMDRTNPHAHIMLTT
RAVGETGFAGKVRDWNDRALAETWRASWADHANRALANAGYQEEIDHRSYERQGLEKAPGLHLGKAACAM
EKRGMETERGEQNRLINSLNLEIQVSRTRLAVIQVQENVRKRELSDAARRAAEALNLTIPAANASADTLR
EFIATLPQECGNAWEMTPEFVAMNGKANDIKREGNALVKERDILEKEMTGLRKARPVASILSELPLMTWA
EPEYRKRQLRFWKLEKQIESLLRTYRAVKERDIPARRQAFETQWNTWISPGMAELKEKLSAREAERRREE
AEAEARRKEQEYDARLKHHDNHRLSRETALAGVITELGRAREPGTGRITRYMMLSNRAGEFTVWGDELAH
YPQSVHDPVNVYLSPGGAVMVSDIREGMPESHETMARPERVRMYSGATVRHVLEQMRQGWPSYGFPALPH
HWPDNFYFSDDRRPVASPLPSAHRVDVTAYAAPEQLMPVVFSTERNSRTLNLLLCKGPEEMLVGFVRLED
ELRPVLALPSPDYSHLMVSIITENGIHLAGYGEAINRDADTPYPPEPKLMQFRLKGCQDTLFAAINKPEE
MPDYLFRQLGFNQTWHEWKRDEQHRQQQRRPGHYRGMSM

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(18-213)


  Protein structure



No available structure.




Host bacterium

ID   17342 GenBank   NZ_CP083733
Plasmid name   pB Incompatibility group   Col156
Plasmid size   4234 bp Coordinate of oriT [Strand]   3365..3539 [-]
Host baterium   Salmonella sp. A29-2

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -