Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 106710 |
| Name | oriT_pEtSC002-2  |
| Organism | Edwardsiella tarda strain SC002 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP116677 (8341..8376 [-], 36 nt) |
| oriT length | 36 nt |
| IRs (inverted repeats) | 7..14, 17..24 (GCAAAACT..AGTTTTGC) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 36 nt
>oriT_pEtSC002-2
AAATCAGCAAAACTTTAGTTTTGCGTAGTGTGTGGT
AAATCAGCAAAACTTTAGTTTTGCGTAGTGTGTGGT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 4433 | GenBank | WP_279509818 |
| Name | TraI_PHA77_RS17685_pEtSC002-2 |
UniProt ID | _ |
| Length | 458 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 458 a.a. Molecular weight: 49070.04 Da Isoelectric Point: 6.6761
>WP_279509818.1 conjugative transfer relaxase/helicase TraI domain-containing protein [Edwardsiella tarda]
MAQDIGGDHSINKALVTLQDETGRQRVLSPQEAVREGVTLYRADTITVSVGDRMRFSKSDSERGFVANNT
WTISVIEGDSVTFTNGNATRVVHPATEPADRHIDLAYAITAHGAQGASESFAIALEGAAGKRRSMVNHAS
AYVALSRARQHVQVYTDNREAWVTAIQKADRGATAHEILQPRGERTADNAARLLAQAVPLSAVAAGRAVL
KQDGLEAGTSLARFVAPGRKYPQPHVAFPAFDENGKAAGAWLSPLSQGDKPAVVVLPREGRLFGSTAARF
VALQTSRNGESRLAAGIEEGVKLAARFPDAGIVVRLQGEGVPWNPGAMTGGRVWADAGETGQGTSGEAAR
LPPEILALRQSEEAARVALEKQAEKTAREMLGQKEKPSPDDVAPEKMRQIVDEVVKGGAEQVPHPADTLP
TLPDHQQSAVELVAERLQRERLQQMERELVRDKTLAGD
MAQDIGGDHSINKALVTLQDETGRQRVLSPQEAVREGVTLYRADTITVSVGDRMRFSKSDSERGFVANNT
WTISVIEGDSVTFTNGNATRVVHPATEPADRHIDLAYAITAHGAQGASESFAIALEGAAGKRRSMVNHAS
AYVALSRARQHVQVYTDNREAWVTAIQKADRGATAHEILQPRGERTADNAARLLAQAVPLSAVAAGRAVL
KQDGLEAGTSLARFVAPGRKYPQPHVAFPAFDENGKAAGAWLSPLSQGDKPAVVVLPREGRLFGSTAARF
VALQTSRNGESRLAAGIEEGVKLAARFPDAGIVVRLQGEGVPWNPGAMTGGRVWADAGETGQGTSGEAAR
LPPEILALRQSEEAARVALEKQAEKTAREMLGQKEKPSPDDVAPEKMRQIVDEVVKGGAEQVPHPADTLP
TLPDHQQSAVELVAERLQRERLQQMERELVRDKTLAGD
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Auxiliary protein
| ID | 1967 | GenBank | WP_279509814 |
| Name | WP_279509814_pEtSC002-2 |
UniProt ID | _ |
| Length | 128 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
Auxiliary protein sequence
Download Length: 128 a.a. Molecular weight: 14836.99 Da Isoelectric Point: 4.8382
>WP_279509814.1 conjugal transfer relaxosome DNA-binding protein TraM [Edwardsiella tarda]
MAKIQAYVSDEVTNKINAIVEARRLEGAKERDVSFSSISTMLLELGLRVYEAQMERKESAFNQMEFNKVL
LESVLKTKRAVDKVMSMESLSPHVQGDPRWVYKNMTQDILQDVNPIIERFFPIEHDDE
MAKIQAYVSDEVTNKINAIVEARRLEGAKERDVSFSSISTMLLELGLRVYEAQMERKESAFNQMEFNKVL
LESVLKTKRAVDKVMSMESLSPHVQGDPRWVYKNMTQDILQDVNPIIERFFPIEHDDE
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 7147 | GenBank | NZ_CP116677 |
| Plasmid name | pEtSC002-2 | Incompatibility group | - |
| Plasmid size | 134101 bp | Coordinate of oriT [Strand] | 8341..8376 [-] |
| Host baterium | Edwardsiella tarda strain SC002 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | pilW |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |