Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 101643 |
| Name | oriT_MSHS 472|punnamed2  |
| Organism | Escherichia coli strain MSHS 472 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_JABFOO010000010 (4910..4969 [-], 60 nt) |
| oriT length | 60 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 60 nt
>oriT_MSHS 472|punnamed2
GGGTGTCGGGGCGCAGCTCTGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTA
GGGTGTCGGGGCGCAGCTCTGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 2087 | GenBank | NZ_JABFOO010000010 |
| Plasmid name | MSHS 472|punnamed2 | Incompatibility group | ColRNAI |
| Plasmid size | 5774 bp | Coordinate of oriT [Strand] | 4910..4969 [-] |
| Host baterium | Escherichia coli strain MSHS 472 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |