ThioFinder

ThioFinder: identification of thiopeptide antibiotic gene clusters in DNA sequences

Please submit a nucleotide sequence by one of the following four methods.

Introduction

Tutorial

A. For plain DNA sequence without annotation

(I) Paste your nucleotide sequence (<200kb) in single-FASTA format. [Format] [Example]

or (II) Upload a single bacterial genome sequence in FASTA format.

Only the gzip-compressed single FASTA file is acceptable (.gz) [Example]
;

Select a gene-finding tool: [

Prodigal] [

Glimmer3]

(Prodigal is suggested to be used for the uploaded sequence > 1Mbp in size.)

or B. For the annotated genome sequence

or (III) select a sequenced and annotated bacterial genome from NCBI genome database.

or (IV) Upload a single bacterial genome sequence and its gene annotation file.

(1) A single nucleotide sequence file in FASTA format: [Format?] [Example];
Only the gzip-compressed single FASTA file is acceptable (.gz)
;

(2) Gene features prepared in NCBI PTT format file: [Format?] [Example];
;