| The web-based resources to antimicrobial peptides |
- BAGEL2,
a genome mining tool for bacteriocin
- antiSMASH,
antibiotics & secondary metabolite analysis shell (including bacteriocins)
- APD,
the antimicrobial peptide database
- BACTIBASE,
a database for bacteriocin characterization
- AMSDb,
a antimicrobial sequences database
- CAMP,
Collection of Anti-Microbial Peptides
- AMPer,
a database and an automated discovery tool for antimicrobial peptides.
- RAPD,
recombinantly-produced antimicrobial peptides database
- DAMPD,
a manually curated antimicrobial peptide database
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| Bioinformatics Tools/ Databases used by ThioFinder |
- GMOD, the Generic Model Organism Database project
- PostgreSQL, an open source relational database management system
- GBrowse, a genome viewer
- WU-BLAST, the Washington University improved version of BLAST
- MUSCLE, protein multiple sequence alignment
- Jalview, a multiple alignment editor written in Java
- HMMER3, sequence homology search using profile hidden Markov models
- LogoMat-M, generate HMM-logos
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| Public database, to which ThioFinder has a hyperlink path |
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