The web-based resources to antimicrobial peptides
  • BAGEL2, a genome mining tool for bacteriocin
  • antiSMASH, antibiotics & secondary metabolite analysis shell (including bacteriocins)

  • APD, the antimicrobial peptide database
  • BACTIBASE, a database for bacteriocin characterization
  • AMSDb, a antimicrobial sequences database
  • CAMP, Collection of Anti-Microbial Peptides
  • AMPer, a database and an automated discovery tool for antimicrobial peptides.
  • RAPD, recombinantly-produced antimicrobial peptides database
  • DAMPD, a manually curated antimicrobial peptide database

Bioinformatics Tools/ Databases used by ThioFinder
  • GMOD, the Generic Model Organism Database project
  • PostgreSQL, an open source relational database management system
  • GBrowse, a genome viewer
  • WU-BLAST, the Washington University improved version of BLAST
  • MUSCLE, protein multiple sequence alignment
  • Jalview, a multiple alignment editor written in Java
  • HMMER3, sequence homology search using profile hidden Markov models
  • LogoMat-M, generate HMM-logos

Public database, to which ThioFinder has a hyperlink path