Detailed information of TA system TA099956

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/VapC-StbC
• Location: 332880..333550
• Replicon: chromosome
• Accession: NZ_CP027717
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain PCM 2210

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: -
• Locus tag: C4K16_RS01460
• Protein ID: WP_081362979.1
• Coordinates: 332880..333308 (-)
• Length: 143 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: A0A3G7DZE9
• Locus tag: C4K16_RS01465
• Protein ID: WP_009046453.1
• Coordinates: 333305..333550 (-)
• Length: 82 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
C4K16_RS01445	327999..330257	+	2259	WP_124335935.1	TonB-dependent receptor	-
C4K16_RS01450	330304..331629	+	1326	WP_081362981.1	LLM class flavin-dependent oxidoreductase	-
C4K16_RS01455	331714..332751	+	1038	WP_016702559.1	L-glyceraldehyde 3-phosphate reductase	-
C4K16_RS01460	332880..333308	-	429	WP_081362979.1	type II toxin-antitoxin system VapC family toxin	Toxin
C4K16_RS01465	333305..333550	-	246	WP_009046453.1	plasmid stabilization protein	Antitoxin
C4K16_RS01470	333690..334529	-	840	WP_124335936.1	taurine dioxygenase	-
C4K16_RS01475	334757..335596	-	840	WP_124335937.1	taurine ABC transporter permease TauC	-
C4K16_RS01480	335593..336387	-	795	WP_038583000.1	taurine ABC transporter ATP-binding subunit	-
C4K16_RS01485	336483..337460	-	978	WP_081362975.1	taurine ABC transporter substrate-binding protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (2-124)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 143 a.a.
• Molecular weight: 15853.36 Da
• Isoelectric Point: 5.4927

>T99956 WP_081362979.1 NZ_CP027717:c333308-332880 [Pseudomonas chlororaphis subsp. aurantiaca]
MIVLDTNVLSELMRPQPDTAVLLWIEAQPVEDLYISAMTMAEILHGIARLPHGKRKQTLHASAVAMFEEDFIDRIVPFGT
QAALYYAHLVSHRERSGQPINLVDAQIAAICRVHDAAIATRNTKDFTDTGLIVINPWLPLEV

Nucleotide

• Length: 429 bp

>T99956 NZ_CP027717:c333308-332880 [Pseudomonas chlororaphis subsp. aurantiaca]
ATGATAGTACTCGACACAAATGTGTTGTCAGAACTGATGCGCCCTCAACCGGATACGGCGGTATTGCTGTGGATCGAAGC
GCAACCCGTCGAGGACCTCTACATCAGCGCTATGACCATGGCCGAGATTCTCCACGGTATCGCGCGCCTGCCCCACGGCA
AGCGCAAACAGACGCTGCATGCATCGGCGGTGGCCATGTTCGAGGAAGACTTCATCGACCGGATCGTGCCCTTCGGAACC
CAAGCAGCTCTTTACTACGCGCATCTGGTTTCGCATCGCGAAAGGTCAGGCCAGCCGATCAATCTGGTGGATGCGCAAAT
TGCAGCGATATGCCGGGTCCACGACGCCGCGATCGCCACTCGTAACACCAAGGATTTCACCGACACCGGGCTGATCGTTA
TCAACCCCTGGCTGCCGCTCGAGGTCTGA

Antitoxin

Protein

• Length: 82 a.a.
• Molecular weight: 9103.27 Da
• Isoelectric Point: 6.2314

>AT99956 WP_009046453.1 NZ_CP027717:c333550-333305 [Pseudomonas chlororaphis subsp. aurantiaca]
MASLTIRNLDDHIKERLRIEAAHNGHSMEEEARLILRRALSRTADSQGLGSRIRARFAETGGVELELPERTEPARLVDLG
E

Nucleotide

• Length: 246 bp

>AT99956 NZ_CP027717:c333550-333305 [Pseudomonas chlororaphis subsp. aurantiaca]
ATGGCCAGCCTTACGATCCGTAATCTGGACGACCACATCAAAGAACGCCTGCGCATCGAGGCCGCTCACAATGGTCATTC
CATGGAAGAAGAAGCCCGATTGATTTTGCGCCGCGCATTGAGCAGGACAGCTGACAGCCAAGGCCTGGGCAGCCGTATCA
GGGCACGCTTTGCCGAGACCGGCGGAGTAGAGCTGGAGCTGCCTGAACGTACCGAACCGGCACGCTTGGTGGACCTGGGC
GAATGA

Structures

Antitoxin

• AlphaFold DB: A0A3G7DZE9