Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 249143..249288 | Replicon | chromosome |
| Accession | NZ_CP027612 | ||
| Organism | Klebsiella pneumoniae subsp. ozaenae strain AR_0096 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 249150..249252 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 249143..249288 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM475_RS01190 | 244675..246108 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AM475_RS01195 | 246224..246463 | + | 240 | WP_002911393.1 | YebV family protein | - |
| AM475_RS01200 | 246561..246752 | + | 192 | WP_002911395.1 | YebW family protein | - |
| AM475_RS01205 | 246749..247402 | - | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| AM475_RS01210 | 247559..248527 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| AM475_RS29430 | 248632..248775 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 249143..249288 | + | 146 | - | - | Antitoxin |
| - | 249150..249252 | - | 103 | - | - | Toxin |
| AM475_RS01220 | 249411..249749 | - | 339 | WP_002911404.1 | YebY family protein | - |
| AM475_RS01225 | 249766..250635 | - | 870 | WP_023285313.1 | copper homeostasis membrane protein CopD | - |
| AM475_RS01230 | 250639..251013 | - | 375 | WP_023285314.1 | CopC domain-containing protein YobA | - |
| AM475_RS01235 | 251126..251356 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AM475_RS01240 | 251435..252094 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| AM475_RS01245 | 252098..254158 | - | 2061 | WP_047694778.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T99764 NZ_CP027612:c249252-249150 [Klebsiella pneumoniae subsp. ozaenae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT99764 NZ_CP027612:249143-249288 [Klebsiella pneumoniae subsp. ozaenae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
