Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2521041..2521275 | Replicon | chromosome |
| Accession | NZ_CP027599 | ||
| Organism | Escherichia coli strain 97-3250 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2521171..2521274 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2521041..2521275 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C7A06_RS13610 | 2517596..2518258 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C7A06_RS13615 | 2518282..2518938 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C7A06_RS13620 | 2519040..2519270 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C7A06_RS13625 | 2519409..2519783 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| C7A06_RS13630 | 2519787..2520659 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| C7A06_RS13635 | 2520672..2521013 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2521041..2521275 | - | 235 | - | - | Antitoxin |
| - | 2521171..2521274 | + | 104 | - | - | Toxin |
| C7A06_RS13640 | 2521406..2522481 | - | 1076 | Protein_2523 | phage integrase Arm DNA-binding domain-containing protein | - |
| C7A06_RS13645 | 2522447..2522728 | - | 282 | WP_001443927.1 | excisionase | - |
| C7A06_RS13650 | 2522835..2523023 | - | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - | 2522839..2523017 | + | 179 | NuclAT_1 | - | - |
| - | 2522839..2523017 | + | 179 | NuclAT_1 | - | - |
| - | 2522839..2523017 | + | 179 | NuclAT_1 | - | - |
| - | 2522839..2523017 | + | 179 | NuclAT_1 | - | - |
| C7A06_RS13655 | 2523016..2523210 | - | 195 | WP_042853000.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| C7A06_RS13660 | 2523267..2524076 | - | 810 | WP_000166317.1 | recombination protein RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | nleG7' | 2515539..2585189 | 69650 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T99711 NZ_CP027599:2521171-2521274 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT99711 NZ_CP027599:c2521275-2521041 [Escherichia coli]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
