Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5234489..5234760 | Replicon | chromosome |
| Accession | NZ_CP027586 | ||
| Organism | Escherichia coli strain 2012EL-2448 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5234527..5234630 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5234489..5234760 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C7A04_RS27840 | 5231646..5233085 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C7A04_RS27845 | 5233203..5233439 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C7A04_RS27850 | 5233544..5233735 | + | 192 | WP_001296140.1 | YebW family protein | - |
| C7A04_RS27855 | 5233736..5234392 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 5234489..5234760 | + | 272 | - | - | Antitoxin |
| - | 5234527..5234630 | - | 104 | - | - | Toxin |
| C7A04_RS27860 | 5234788..5235129 | - | 342 | WP_000976492.1 | YebY family protein | - |
| C7A04_RS27865 | 5235142..5236014 | - | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| C7A04_RS27870 | 5236018..5236392 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| C7A04_RS27875 | 5236531..5236761 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C7A04_RS27880 | 5236863..5237519 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C7A04_RS27885 | 5237543..5238205 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T99639 NZ_CP027586:c5234630-5234527 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT99639 NZ_CP027586:5234489-5234760 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
