Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4057985..4058253 | Replicon | chromosome |
| Accession | NZ_CP027452 | ||
| Organism | Escherichia coli strain 2014C-3338 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4058113..4058215 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4057985..4058253 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6W71_RS20720 | 4054539..4055201 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C6W71_RS20725 | 4055225..4055881 | - | 657 | WP_000011673.1 | carbon-nitrogen hydrolase family protein | - |
| C6W71_RS20730 | 4055983..4056213 | - | 231 | WP_000916759.1 | DNA polymerase III subunit theta | - |
| C6W71_RS20735 | 4056352..4056725 | + | 374 | Protein_3786 | CopC domain-containing protein YobA | - |
| C6W71_RS20740 | 4056729..4057601 | + | 873 | WP_000879316.1 | copper homeostasis membrane protein CopD | - |
| C6W71_RS20745 | 4057614..4057955 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 4057985..4058253 | - | 269 | - | - | Antitoxin |
| - | 4058113..4058215 | + | 103 | - | - | Toxin |
| C6W71_RS20750 | 4058350..4059006 | + | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| C6W71_RS20755 | 4059007..4059198 | - | 192 | WP_001317886.1 | YebW family protein | - |
| C6W71_RS20760 | 4059303..4059539 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C6W71_RS20765 | 4059657..4061097 | - | 1441 | Protein_3792 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T98945 NZ_CP027452:4058113-4058215 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT98945 NZ_CP027452:c4058253-4057985 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
