Detailed information of TA system TA098622

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): itaRT/DUF1778(antitoxin)
• Location: 4343509..4344346
• Replicon: chromosome
• Accession: NZ_CP027394
• Organism: Escherichia coli O104:H4 strain FDAARGOS_349

Toxin (Protein)

• Gene name: itaT
• Uniprot ID: Q3Z4X7
• Locus tag: CEQ27_RS23485
• Protein ID: WP_000227784.1
• Coordinates: 4343509..4344051 (-)
• Length: 181 a.a.

Antitoxin (Protein)

• Gene name: itaR
• Uniprot ID: I2UQS9
• Locus tag: CEQ27_RS23490
• Protein ID: WP_001297137.1
• Coordinates: 4344035..4344346 (-)
• Length: 104 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
CEQ27_RS23465	4339048..4339959	-	912	WP_000705874.1	2-dehydropantoate 2-reductase	-
CEQ27_RS23470	4340127..4340618	+	492	WP_001138904.1	nucleotide binding protein YajQ	-
CEQ27_RS23475	4340746..4342110	-	1365	WP_001000974.1	MFS transporter	-
CEQ27_RS23480	4342518..4343453	+	936	WP_024174603.1	sel1 repeat family protein	-
CEQ27_RS23485	4343509..4344051	-	543	WP_000227784.1	GNAT family N-acetyltransferase	Toxin
CEQ27_RS23490	4344035..4344346	-	312	WP_001297137.1	DUF1778 domain-containing protein	Antitoxin
CEQ27_RS23495	4344531..4345421	-	891	WP_000971336.1	heme o synthase	-
CEQ27_RS23500	4345433..4345762	-	330	WP_000019869.1	cytochrome o ubiquinol oxidase subunit IV	-
CEQ27_RS23505	4345762..4346376	-	615	WP_000179819.1	cytochrome o ubiquinol oxidase subunit III	-
CEQ27_RS23510	4346366..4348357	-	1992	WP_000467180.1	cytochrome o ubiquinol oxidase subunit I	-
CEQ27_RS23515	4348379..4349326	-	948	WP_001239441.1	cytochrome o ubiquinol oxidase subunit II	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• GNAT domain (68-156)

Antitoxin

• Vibrio phage ICP1, Orf50 (14-97)

Sequences

Toxin

Protein

• Length: 181 a.a.
• Molecular weight: 19805.02 Da
• Isoelectric Point: 8.3395

>T98622 WP_000227784.1 NZ_CP027394:c4344051-4343509 [Escherichia coli O104:H4]
MVDKHEEITLPIVLSCNYQSDITYPGQKQFDCGNPVIDKFVRASLKKSVRNSDCAAKALIDRQSGELIGICTFTAYSLEK
QRVSGVLQGSQPSEIGVVRLVMLGVARKYQKRGFGQDLLCDFFEHVKIIHQALPIKGVYLDADPAAINFYARLGFVQLSA
TPNAFGAVPMFLAIQHILAA

Nucleotide

• Length: 543 bp

>T98622 NZ_CP027394:c4344051-4343509 [Escherichia coli O104:H4]
ATGGTCGACAAGCATGAAGAGATTACTCTGCCCATAGTCCTCTCCTGTAATTATCAGTCTGATATTACTTATCCTGGGCA
AAAACAGTTTGATTGCGGTAACCCTGTTATCGATAAATTTGTACGCGCATCGCTAAAGAAAAGTGTGCGTAATAGCGACT
GTGCGGCTAAAGCACTTATTGACAGACAAAGTGGTGAACTGATCGGCATCTGTACTTTTACGGCATATTCGCTGGAAAAA
CAACGCGTTTCTGGCGTCCTTCAGGGTTCACAACCTTCAGAAATTGGTGTTGTCAGATTAGTCATGTTGGGGGTAGCACG
GAAGTATCAAAAGCGGGGCTTTGGTCAGGACCTACTATGTGATTTTTTTGAACATGTAAAAATAATTCACCAGGCATTAC
CAATTAAAGGGGTTTATCTTGATGCTGACCCTGCCGCCATTAATTTTTATGCTCGTCTCGGCTTTGTTCAGCTTTCAGCG
ACACCAAATGCTTTTGGTGCTGTACCTATGTTTTTGGCGATTCAGCATATTCTCGCGGCTTAG

Antitoxin

Protein

• Length: 104 a.a.
• Molecular weight: 11358.04 Da
• Isoelectric Point: 10.4825

>AT98622 WP_001297137.1 NZ_CP027394:c4344346-4344035 [Escherichia coli O104:H4]
MPGKTATLPDVDKTLKNARVELKTSPDAKNKLREAAQAVGVDLSAFILSAAMERAESVLDNQRRRELSNQSWELMNQLIA
EPAQPTLALKALMKRKNSDGRQA

Nucleotide

• Length: 312 bp

>AT98622 NZ_CP027394:c4344346-4344035 [Escherichia coli O104:H4]
ATGCCTGGAAAAACAGCCACTCTACCCGATGTCGATAAAACGCTGAAAAATGCGCGGGTCGAACTCAAAACTAGTCCCGA
CGCCAAAAACAAACTTCGTGAAGCTGCGCAAGCCGTTGGGGTAGATTTAAGCGCTTTTATTTTGAGCGCTGCTATGGAAC
GCGCCGAAAGTGTGCTTGATAACCAACGTCGCCGTGAGCTTTCGAATCAAAGCTGGGAACTGATGAACCAACTCATCGCT
GAACCTGCTCAACCGACGCTCGCCCTCAAGGCGTTAATGAAAAGGAAAAACAGCGATGGTCGACAAGCATGA

Structures

Toxin

• PDB: 7BYY

Antitoxin

• AlphaFold DB: A0A0E0Y6B3