Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1507878..1508149 | Replicon | chromosome |
| Accession | NZ_CP027388 | ||
| Organism | Escherichia coli strain 2011C-4251 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1507916..1508019 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1507878..1508149 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6P70_RS08310 | 1505035..1506474 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C6P70_RS08315 | 1506592..1506828 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C6P70_RS08320 | 1506933..1507124 | + | 192 | WP_001296140.1 | YebW family protein | - |
| C6P70_RS08325 | 1507125..1507781 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 1507878..1508149 | + | 272 | - | - | Antitoxin |
| - | 1507916..1508019 | - | 104 | - | - | Toxin |
| C6P70_RS08330 | 1508177..1508518 | - | 342 | WP_000976472.1 | YebY family protein | - |
| C6P70_RS08335 | 1508531..1509403 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| C6P70_RS08340 | 1509407..1509781 | - | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| C6P70_RS08345 | 1509920..1510150 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C6P70_RS08350 | 1510252..1510908 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C6P70_RS08355 | 1510932..1511594 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T98535 NZ_CP027388:c1508019-1507916 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT98535 NZ_CP027388:1507878-1508149 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
