Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 658565..658836 | Replicon | chromosome |
| Accession | NZ_CP027368 | ||
| Organism | Escherichia coli strain 2014C-3307 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 658695..658798 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 658565..658836 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6P71_RS03300 | 655120..655782 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C6P71_RS03305 | 655806..656462 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C6P71_RS03310 | 656564..656794 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C6P71_RS03315 | 656933..657307 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| C6P71_RS03320 | 657311..658183 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| C6P71_RS03325 | 658196..658537 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 658565..658836 | - | 272 | - | - | Antitoxin |
| - | 658695..658798 | + | 104 | - | - | Toxin |
| C6P71_RS03330 | 658933..659589 | + | 657 | WP_000812735.1 | protein-serine/threonine phosphatase | - |
| C6P71_RS03335 | 659590..659781 | - | 192 | WP_001296140.1 | YebW family protein | - |
| C6P71_RS03340 | 659886..660122 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C6P71_RS03345 | 660240..661679 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T98377 NZ_CP027368:658695-658798 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT98377 NZ_CP027368:c658836-658565 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
