Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4103641..4103912 | Replicon | chromosome |
| Accession | NZ_CP027255 | ||
| Organism | Escherichia coli strain EC11 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4103771..4103874 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4103641..4103912 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6C13_RS20930 | 4100196..4100858 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C6C13_RS20935 | 4100882..4101538 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| C6C13_RS20940 | 4101640..4101870 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C6C13_RS20945 | 4102009..4102383 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| C6C13_RS20950 | 4102387..4103259 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| C6C13_RS20955 | 4103272..4103613 | + | 342 | WP_077782265.1 | YebY family protein | - |
| - | 4103641..4103912 | - | 272 | - | - | Antitoxin |
| - | 4103771..4103874 | + | 104 | - | - | Toxin |
| C6C13_RS20960 | 4104009..4104665 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| C6C13_RS20965 | 4104666..4104857 | - | 192 | WP_001296140.1 | YebW family protein | - |
| C6C13_RS20970 | 4104962..4105198 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C6C13_RS20975 | 4105316..4106755 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T97756 NZ_CP027255:4103771-4103874 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT97756 NZ_CP027255:c4103912-4103641 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
