Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2928887..2929158 | Replicon | chromosome |
| Accession | NZ_CP027221 | ||
| Organism | Escherichia coli strain 2015C-3101 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2928925..2929028 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2928887..2929158 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6H98_RS15640 | 2926044..2927483 | + | 1440 | WP_000057021.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C6H98_RS15645 | 2927601..2927837 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C6H98_RS15650 | 2927942..2928133 | + | 192 | WP_001296140.1 | YebW family protein | - |
| C6H98_RS15655 | 2928134..2928790 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2928887..2929158 | + | 272 | - | - | Antitoxin |
| - | 2928925..2929028 | - | 104 | - | - | Toxin |
| C6H98_RS15660 | 2929186..2929527 | - | 342 | WP_000976492.1 | YebY family protein | - |
| C6H98_RS15665 | 2929540..2930412 | - | 873 | WP_000879274.1 | copper homeostasis membrane protein CopD | - |
| C6H98_RS15670 | 2930416..2930790 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| C6H98_RS15675 | 2930929..2931159 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C6H98_RS15680 | 2931261..2931917 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C6H98_RS15685 | 2931941..2932603 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T97686 NZ_CP027221:c2929028-2928925 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT97686 NZ_CP027221:2928887-2929158 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
