Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1856775..1856976 | Replicon | chromosome |
| Accession | NZ_CP027142 | ||
| Organism | Enterobacter hormaechei subsp. hoffmannii strain AR_0365 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1856780..1856883 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1856775..1856976 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CSC02_RS09200 | 1853022..1854485 | + | 1464 | WP_032671284.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CSC02_RS09205 | 1854590..1854829 | + | 240 | WP_006811010.1 | YebV family protein | - |
| CSC02_RS09210 | 1854864..1855508 | - | 645 | WP_023306475.1 | protein-serine/threonine phosphatase | - |
| CSC02_RS09215 | 1855676..1856656 | + | 981 | WP_023306476.1 | VirK/YbjX family protein | - |
| - | 1856775..1856976 | + | 202 | - | - | Antitoxin |
| - | 1856780..1856883 | - | 104 | - | - | Toxin |
| CSC02_RS09230 | 1857025..1857363 | - | 339 | WP_022648464.1 | YebY family protein | - |
| CSC02_RS09235 | 1857380..1858249 | - | 870 | WP_023300432.1 | copper homeostasis membrane protein CopD | - |
| CSC02_RS09240 | 1858251..1858622 | - | 372 | WP_105322776.1 | CopC domain-containing protein YobA | - |
| CSC02_RS09245 | 1858760..1858990 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| CSC02_RS09250 | 1859102..1859740 | + | 639 | WP_022648467.1 | carbon-nitrogen hydrolase family protein | - |
| CSC02_RS09255 | 1859765..1860427 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T97468 NZ_CP027142:c1856883-1856780 [Enterobacter hormaechei subsp. hoffmannii]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT97468 NZ_CP027142:1856775-1856976 [Enterobacter hormaechei subsp. hoffmannii]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
