Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2596398..2596666 | Replicon | chromosome |
| Accession | NZ_CP027103 | ||
| Organism | Escherichia coli strain RM14723 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2596436..2596538 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2596398..2596666 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C5099_RS13485 | 2593555..2594994 | + | 1440 | WP_001313925.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C5099_RS13490 | 2595112..2595348 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C5099_RS13495 | 2595453..2595644 | + | 192 | WP_001357784.1 | YebW family protein | - |
| C5099_RS13500 | 2595645..2596301 | - | 657 | WP_001357783.1 | protein-serine/threonine phosphatase | - |
| - | 2596398..2596666 | + | 269 | - | - | Antitoxin |
| - | 2596436..2596538 | - | 103 | - | - | Toxin |
| C5099_RS13505 | 2596696..2597037 | - | 342 | WP_001357782.1 | YebY family protein | - |
| C5099_RS13510 | 2597050..2597922 | - | 873 | WP_001357781.1 | copper homeostasis membrane protein CopD | - |
| C5099_RS13515 | 2597926..2598300 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| C5099_RS13520 | 2598439..2598669 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C5099_RS13525 | 2598770..2599426 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| C5099_RS13530 | 2599450..2600112 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T97251 NZ_CP027103:c2596538-2596436 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT97251 NZ_CP027103:2596398-2596666 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
