Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | stbDE/ParE-DnaT |
Location | 371226..371757 | Replicon | chromosome |
Accession | NZ_CP026983 | ||
Organism | Pectobacterium parmentieri strain IFB5604 |
Toxin (Protein)
Gene name | stbE | Uniprot ID | - |
Locus tag | C5E23_RS01770 | Protein ID | WP_103808553.1 |
Coordinates | 371470..371757 (+) | Length | 96 a.a. |
Antitoxin (Protein)
Gene name | stbD | Uniprot ID | - |
Locus tag | C5E23_RS01765 | Protein ID | WP_103808552.1 |
Coordinates | 371226..371480 (+) | Length | 85 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
C5E23_RS01740 | 366444..367034 | - | 591 | WP_011091952.1 | DnaA initiator-associating protein DiaA | - |
C5E23_RS01745 | 367076..367432 | - | 357 | WP_012822117.1 | YraN family protein | - |
C5E23_RS01750 | 367429..369447 | - | 2019 | WP_014698522.1 | penicillin-binding protein activator | - |
C5E23_RS01755 | 369509..370396 | + | 888 | WP_014698523.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
C5E23_RS01765 | 371226..371480 | + | 255 | WP_103808552.1 | plasmid stabilization protein | Antitoxin |
C5E23_RS01770 | 371470..371757 | + | 288 | WP_103808553.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
C5E23_RS01775 | 371939..372727 | + | 789 | WP_033072300.1 | 4,5-DOPA dioxygenase extradiol | - |
C5E23_RS01780 | 372815..373975 | - | 1161 | WP_103808554.1 | glutathionylspermidine synthase family protein | - |
C5E23_RS01785 | 373987..374655 | - | 669 | WP_012822126.1 | DUF1190 family protein | - |
C5E23_RS01790 | 374939..376330 | - | 1392 | WP_012822127.1 | outer membrane channel protein TolC | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 10997.89 Da Isoelectric Point: 10.7148
>T96969 WP_103808553.1 NZ_CP026983:371470-371757 [Pectobacterium parmentieri]
MTYKLKFVPSAMKEWKKLGHPVREQFKKKLVERLENPRVPSAQLHGRKDQYKIKLKSAGYRLVYLVQDETITVMVMGVGK
REGSQVYSDTQGRSA
MTYKLKFVPSAMKEWKKLGHPVREQFKKKLVERLENPRVPSAQLHGRKDQYKIKLKSAGYRLVYLVQDETITVMVMGVGK
REGSQVYSDTQGRSA
Download Length: 288 bp
>T96969 NZ_CP026983:371470-371757 [Pectobacterium parmentieri]
ATGACCTATAAGTTAAAATTTGTGCCTTCTGCAATGAAGGAATGGAAAAAATTAGGGCATCCTGTCAGGGAACAATTCAA
AAAAAAGCTAGTTGAGCGTTTAGAAAATCCTCGAGTCCCTTCGGCTCAACTTCATGGCCGTAAAGACCAGTATAAAATTA
AACTGAAGTCTGCTGGTTACAGGCTGGTGTATTTGGTTCAAGATGAGACCATTACGGTGATGGTCATGGGGGTTGGAAAG
CGCGAAGGTAGCCAGGTTTATTCTGATACTCAAGGTCGCTCTGCTTAA
ATGACCTATAAGTTAAAATTTGTGCCTTCTGCAATGAAGGAATGGAAAAAATTAGGGCATCCTGTCAGGGAACAATTCAA
AAAAAAGCTAGTTGAGCGTTTAGAAAATCCTCGAGTCCCTTCGGCTCAACTTCATGGCCGTAAAGACCAGTATAAAATTA
AACTGAAGTCTGCTGGTTACAGGCTGGTGTATTTGGTTCAAGATGAGACCATTACGGTGATGGTCATGGGGGTTGGAAAG
CGCGAAGGTAGCCAGGTTTATTCTGATACTCAAGGTCGCTCTGCTTAA
Antitoxin
Download Length: 85 a.a. Molecular weight: 9284.50 Da Isoelectric Point: 3.7947
>AT96969 WP_103808552.1 NZ_CP026983:371226-371480 [Pectobacterium parmentieri]
MAFNILTNTVASITELKRDPMGTVRSAEGETIAILNRNEPAFYCVPPAMFAYLMELAEDAELGRTVDDRMSELADAEEIS
LDDL
MAFNILTNTVASITELKRDPMGTVRSAEGETIAILNRNEPAFYCVPPAMFAYLMELAEDAELGRTVDDRMSELADAEEIS
LDDL
Download Length: 255 bp
>AT96969 NZ_CP026983:371226-371480 [Pectobacterium parmentieri]
ATGGCTTTCAATATCCTAACTAACACAGTGGCCAGCATTACTGAGCTGAAACGTGACCCAATGGGGACAGTACGGTCCGC
TGAAGGTGAGACTATCGCGATACTGAACCGCAATGAGCCTGCGTTCTATTGTGTGCCTCCTGCCATGTTCGCTTATTTAA
TGGAATTGGCTGAAGATGCAGAACTGGGGCGTACCGTTGATGATCGTATGTCAGAGTTAGCTGACGCGGAAGAGATTTCG
CTCGATGACCTATAA
ATGGCTTTCAATATCCTAACTAACACAGTGGCCAGCATTACTGAGCTGAAACGTGACCCAATGGGGACAGTACGGTCCGC
TGAAGGTGAGACTATCGCGATACTGAACCGCAATGAGCCTGCGTTCTATTGTGTGCCTCCTGCCATGTTCGCTTATTTAA
TGGAATTGGCTGAAGATGCAGAACTGGGGCGTACCGTTGATGATCGTATGTCAGAGTTAGCTGACGCGGAAGAGATTTCG
CTCGATGACCTATAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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