Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2152640..2152911 | Replicon | chromosome |
| Accession | NZ_CP026939 | ||
| Organism | Escherichia coli strain CFS3313 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2152770..2152873 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2152640..2152911 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C5F74_RS10260 | 2149195..2149857 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C5F74_RS10265 | 2149881..2150537 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| C5F74_RS10270 | 2150639..2150869 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C5F74_RS10275 | 2151008..2151382 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| C5F74_RS10280 | 2151386..2152258 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| C5F74_RS10285 | 2152271..2152612 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2152640..2152911 | - | 272 | - | - | Antitoxin |
| - | 2152770..2152873 | + | 104 | - | - | Toxin |
| C5F74_RS10290 | 2153008..2153664 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| C5F74_RS10295 | 2153665..2153856 | - | 192 | WP_001296140.1 | YebW family protein | - |
| C5F74_RS10300 | 2153961..2154197 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C5F74_RS10305 | 2154315..2155754 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T96747 NZ_CP026939:2152770-2152873 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT96747 NZ_CP026939:c2152911-2152640 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
