Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3334482..3334753 | Replicon | chromosome |
| Accession | NZ_CP026932 | ||
| Organism | Escherichia coli strain CFS3273 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3334520..3334623 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3334482..3334753 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C5F73_RS16110 | 3331639..3333078 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C5F73_RS16115 | 3333196..3333432 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C5F73_RS16120 | 3333537..3333728 | + | 192 | WP_000457842.1 | YebW family protein | - |
| C5F73_RS16125 | 3333729..3334385 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 3334482..3334753 | + | 272 | - | - | Antitoxin |
| - | 3334520..3334623 | - | 104 | - | - | Toxin |
| C5F73_RS16130 | 3334781..3335122 | - | 342 | WP_000976476.1 | YebY family protein | - |
| C5F73_RS16135 | 3335135..3336007 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| C5F73_RS16140 | 3336011..3336385 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| C5F73_RS16145 | 3336524..3336754 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C5F73_RS16150 | 3336856..3337512 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C5F73_RS16155 | 3337536..3338198 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T96672 NZ_CP026932:c3334623-3334520 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT96672 NZ_CP026932:3334482-3334753 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
