Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 2603017..2603852 | Replicon | chromosome |
| Accession | NZ_CP026828 | ||
| Organism | Shigella dysenteriae strain ATCC 12037 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | - |
| Locus tag | C1P70_RS13285 | Protein ID | WP_134807077.1 |
| Coordinates | 2603017..2603394 (-) | Length | 126 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | S1NM52 |
| Locus tag | C1P70_RS13290 | Protein ID | WP_001295723.1 |
| Coordinates | 2603484..2603852 (-) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P70_RS13245 (2598431) | 2598431..2599489 | + | 1059 | WP_074499974.1 | FUSC family protein | - |
| C1P70_RS13250 (2599587) | 2599587..2600284 | + | 698 | WP_134795416.1 | IS1-like element IS1SD family transposase | - |
| C1P70_RS13255 (2600438) | 2600438..2600767 | + | 330 | WP_000450409.1 | DUF496 family protein | - |
| C1P70_RS26670 (2600868) | 2600868..2601233 | - | 366 | WP_252988891.1 | EutP/PduV family microcompartment system protein | - |
| C1P70_RS26675 (2601504) | 2601504..2601875 | - | 372 | WP_001295631.1 | IS110 family transposase | - |
| C1P70_RS26255 (2602691) | 2602691..2602771 | - | 81 | Protein_2557 | hypothetical protein | - |
| C1P70_RS13280 (2602817) | 2602817..2603020 | - | 204 | WP_000761705.1 | DUF5983 family protein | - |
| C1P70_RS13285 (2603017) | 2603017..2603394 | - | 378 | WP_134807077.1 | TA system toxin CbtA family protein | Toxin |
| C1P70_RS13290 (2603484) | 2603484..2603852 | - | 369 | WP_001295723.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| C1P70_RS13295 (2604015) | 2604015..2604236 | - | 222 | WP_112027073.1 | DUF987 domain-containing protein | - |
| C1P70_RS13300 (2604299) | 2604299..2604775 | - | 477 | WP_001186773.1 | RadC family protein | - |
| C1P70_RS13305 (2604791) | 2604791..2605264 | - | 474 | WP_134807078.1 | antirestriction protein | - |
| C1P70_RS13315 (2605606) | 2605606..2606424 | - | 819 | WP_134807079.1 | DUF932 domain-containing protein | - |
| C1P70_RS13325 (2606542) | 2606542..2606737 | - | 196 | Protein_2565 | DUF905 family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 2599907..2600284 | 377 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 126 a.a. Molecular weight: 14255.27 Da Isoelectric Point: 6.9482
>T96267 WP_134807077.1 NZ_CP026828:c2603394-2603017 [Shigella dysenteriae]
MKTLPDTHVREVSCCPSLVTIWQTLLTRLLDQHYSLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQSEF
SACTHSQLINSIDILRARRATGLMTRDNYRTVNNITLGKHPEAKR
MKTLPDTHVREVSCCPSLVTIWQTLLTRLLDQHYSLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQSEF
SACTHSQLINSIDILRARRATGLMTRDNYRTVNNITLGKHPEAKR
Download Length: 378 bp
>T96267 NZ_CP026828:c2603394-2603017 [Shigella dysenteriae]
ATGAAAACATTACCCGACACGCATGTACGGGAGGTATCGTGCTGCCCGTCTCTCGTCACCATCTGGCAGACACTGCTCAC
CCGACTGCTGGACCAGCATTACAGCCTTACGCTGAATGACACACCGTTCGCTGATGAACGTGTGATTGAACAGCATATTG
AGGCAGGCATTTCACTGTGTGACGCGGTGAACTTTCTCGTTGAAAAATACGCGCTGGTACGTACCGACCAGTCGGAATTC
AGCGCCTGTACCCACTCTCAGTTAATAAACAGCATCGATATCCTCCGGGCTCGCCGGGCAACAGGCCTGATGACCCGCGA
CAATTACAGAACGGTAAATAACATTACCCTGGGGAAGCATCCGGAGGCGAAACGATGA
ATGAAAACATTACCCGACACGCATGTACGGGAGGTATCGTGCTGCCCGTCTCTCGTCACCATCTGGCAGACACTGCTCAC
CCGACTGCTGGACCAGCATTACAGCCTTACGCTGAATGACACACCGTTCGCTGATGAACGTGTGATTGAACAGCATATTG
AGGCAGGCATTTCACTGTGTGACGCGGTGAACTTTCTCGTTGAAAAATACGCGCTGGTACGTACCGACCAGTCGGAATTC
AGCGCCTGTACCCACTCTCAGTTAATAAACAGCATCGATATCCTCCGGGCTCGCCGGGCAACAGGCCTGATGACCCGCGA
CAATTACAGAACGGTAAATAACATTACCCTGGGGAAGCATCCGGAGGCGAAACGATGA
Antitoxin
Download Length: 123 a.a. Molecular weight: 13592.40 Da Isoelectric Point: 6.6255
>AT96267 WP_001295723.1 NZ_CP026828:c2603852-2603484 [Shigella dysenteriae]
VSDTLSGTTHPDDNDDHPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFRDADAYPLDQAFPLLMKQLKLMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPETKK
VSDTLSGTTHPDDNDDHPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFRDADAYPLDQAFPLLMKQLKLMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPETKK
Download Length: 369 bp
>AT96267 NZ_CP026828:c2603852-2603484 [Shigella dysenteriae]
GTGTCAGACACACTTTCCGGGACAACGCATCCCGATGACAATGACGACCATCCCTGGTGGGGACTACCCTGCACAGTGAC
GCCCTGTTTCGGCGCCCGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGTGCCGGTATCAGAGGCCGGT
TCAGAGATGCGGATGCGTACCCTCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGAAATTAATGCTCACCAGTGGT
GAACTGAATCCCCGCCATCAGCATACCGTGACACTGTATGCGAAGGGGCTGACCTGTGAAGCCGACACCCTCGGCTCCTG
TGGTTACGTTTATCTGGCTGTTTATCCGACACCTGAAACGAAAAAGTAA
GTGTCAGACACACTTTCCGGGACAACGCATCCCGATGACAATGACGACCATCCCTGGTGGGGACTACCCTGCACAGTGAC
GCCCTGTTTCGGCGCCCGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGTGCCGGTATCAGAGGCCGGT
TCAGAGATGCGGATGCGTACCCTCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGAAATTAATGCTCACCAGTGGT
GAACTGAATCCCCGCCATCAGCATACCGTGACACTGTATGCGAAGGGGCTGACCTGTGAAGCCGACACCCTCGGCTCCTG
TGGTTACGTTTATCTGGCTGTTTATCCGACACCTGAAACGAAAAAGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|