Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2807652..2807797 | Replicon | chromosome |
| Accession | NZ_CP026697 | ||
| Organism | Citrobacter koseri strain AR_0025 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2807687..2807790 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2807652..2807797 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM352_RS13635 | 2804108..2804770 | - | 663 | WP_012132019.1 | exodeoxyribonuclease X | - |
| AM352_RS13640 | 2804794..2805450 | - | 657 | WP_024130258.1 | carbon-nitrogen hydrolase family protein | - |
| AM352_RS13645 | 2805556..2805786 | - | 231 | WP_024130259.1 | DNA polymerase III subunit theta | - |
| AM352_RS13650 | 2805927..2806301 | + | 375 | WP_012132022.1 | CopC domain-containing protein YobA | - |
| AM352_RS13655 | 2806301..2807176 | + | 876 | WP_104868547.1 | copper homeostasis membrane protein CopD | - |
| AM352_RS13660 | 2807193..2807531 | + | 339 | WP_012132024.1 | YebY family protein | - |
| - | 2807652..2807797 | - | 146 | - | - | Antitoxin |
| - | 2807687..2807790 | + | 104 | - | - | Toxin |
| AM352_RS13665 | 2808198..2808389 | - | 192 | WP_012132027.1 | YlcI/YnfO family protein | - |
| AM352_RS13670 | 2808759..2810846 | - | 2088 | WP_104869126.1 | TonB-dependent receptor | - |
| AM352_RS13675 | 2811094..2811756 | + | 663 | WP_047464032.1 | protein-serine/threonine phosphatase | - |
| AM352_RS13680 | 2811757..2811948 | - | 192 | WP_012132031.1 | YebW family protein | - |
| AM352_RS13685 | 2812051..2812287 | - | 237 | WP_024130262.1 | DUF1480 family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T95457 NZ_CP026697:2807687-2807790 [Citrobacter koseri]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT95457 NZ_CP026697:c2807797-2807652 [Citrobacter koseri]
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
