Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5228680..5228846 | Replicon | chromosome |
| Accession | NZ_CP026047 | ||
| Organism | Raoultella planticola strain FDAARGOS_64 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5228685..5228788 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5228680..5228846 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MC50_RS25140 | 5224265..5225698 | + | 1434 | WP_047665217.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| MC50_RS25145 | 5225813..5226052 | + | 240 | WP_004863958.1 | YebV family protein | - |
| MC50_RS25150 | 5226146..5226337 | + | 192 | WP_047665219.1 | YebW family protein | - |
| MC50_RS25155 | 5226343..5226987 | - | 645 | WP_047665221.1 | protein-serine/threonine phosphatase | - |
| MC50_RS25160 | 5227130..5228101 | + | 972 | WP_185954808.1 | VirK/YbjX family protein | - |
| MC50_RS28630 | 5228222..5228365 | + | 144 | WP_142131748.1 | Ecr family regulatory small membrane protein | - |
| - | 5228680..5228846 | + | 167 | - | - | Antitoxin |
| - | 5228685..5228788 | - | 104 | - | - | Toxin |
| MC50_RS25170 | 5228945..5229283 | - | 339 | WP_032686940.1 | YebY family protein | - |
| MC50_RS25175 | 5229300..5230169 | - | 870 | WP_032695278.1 | copper homeostasis membrane protein CopD | - |
| MC50_RS25180 | 5230173..5230547 | - | 375 | WP_032695279.1 | CopC domain-containing protein YobA | - |
| MC50_RS25185 | 5230674..5230904 | + | 231 | WP_004863978.1 | DNA polymerase III subunit theta | - |
| MC50_RS25190 | 5230983..5231642 | + | 660 | WP_032686937.1 | exodeoxyribonuclease X | - |
| MC50_RS25195 | 5231648..5233708 | - | 2061 | WP_047665226.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T92926 NZ_CP026047:c5228788-5228685 [Raoultella planticola]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 167 bp
>AT92926 NZ_CP026047:5228680-5228846 [Raoultella planticola]
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
