Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3963709..3963980 | Replicon | chromosome |
| Accession | NZ_CP025913 | ||
| Organism | Escherichia coli strain 203740 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3963747..3963850 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3963709..3963980 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CXW72_RS19615 | 3960866..3962305 | + | 1440 | WP_001397399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CXW72_RS19620 | 3962423..3962659 | + | 237 | WP_001338166.1 | DUF1480 family protein | - |
| CXW72_RS19625 | 3962764..3962955 | + | 192 | WP_001338167.1 | YebW family protein | - |
| CXW72_RS19630 | 3962956..3963612 | - | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| - | 3963709..3963980 | + | 272 | - | - | Antitoxin |
| - | 3963747..3963850 | - | 104 | - | - | Toxin |
| CXW72_RS19635 | 3964008..3964349 | - | 342 | WP_000976472.1 | YebY family protein | - |
| CXW72_RS19640 | 3964362..3965234 | - | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| CXW72_RS19645 | 3965238..3965612 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| CXW72_RS19650 | 3965751..3965981 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CXW72_RS19655 | 3966083..3966739 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CXW72_RS19660 | 3966763..3967425 | + | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T92413 NZ_CP025913:c3963850-3963747 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT92413 NZ_CP025913:3963709-3963980 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
