Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 452753..453024 | Replicon | chromosome |
| Accession | NZ_CP025851 | ||
| Organism | Escherichia coli strain 510016 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 452791..452894 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 452753..453024 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CXX11_RS02210 | 449911..451350 | + | 1440 | WP_001400472.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CXX11_RS02215 | 451467..451703 | + | 237 | WP_001338166.1 | DUF1480 family protein | - |
| CXX11_RS02220 | 451808..451999 | + | 192 | WP_001338167.1 | YebW family protein | - |
| CXX11_RS02225 | 452000..452656 | - | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| - | 452753..453024 | + | 272 | - | - | Antitoxin |
| - | 452791..452894 | - | 104 | - | - | Toxin |
| CXX11_RS02230 | 453052..453393 | - | 342 | WP_000976472.1 | YebY family protein | - |
| CXX11_RS02235 | 453406..454278 | - | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| CXX11_RS02240 | 454282..454656 | - | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| CXX11_RS02245 | 454795..455025 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CXX11_RS02250 | 455127..455783 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CXX11_RS02255 | 455807..456469 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T92115 NZ_CP025851:c452894-452791 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT92115 NZ_CP025851:452753-453024 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
