Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2286970..2287241 | Replicon | chromosome |
| Accession | NZ_CP025573 | ||
| Organism | Escherichia coli strain E-1246 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2287008..2287111 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2286970..2287241 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CY655_RS11430 | 2284127..2285566 | + | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CY655_RS11435 | 2285684..2285920 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CY655_RS11440 | 2286025..2286216 | + | 192 | WP_001296140.1 | YebW family protein | - |
| CY655_RS11445 | 2286217..2286873 | - | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| - | 2286970..2287241 | + | 272 | - | - | Antitoxin |
| - | 2287008..2287111 | - | 104 | - | - | Toxin |
| CY655_RS11450 | 2287269..2287610 | - | 342 | WP_000976472.1 | YebY family protein | - |
| CY655_RS11455 | 2287623..2288495 | - | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| CY655_RS11460 | 2288499..2288873 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| CY655_RS11465 | 2289012..2289242 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CY655_RS11470 | 2289344..2290000 | + | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| CY655_RS11475 | 2290024..2290686 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T90571 NZ_CP025573:c2287111-2287008 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT90571 NZ_CP025573:2286970-2287241 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
