Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1825465..1825697 | Replicon | chromosome |
| Accession | NZ_CP025317 | ||
| Organism | Escherichia albertii strain 1551-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1825467..1825570 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1825465..1825697 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CXP54_RS09245 | 1821234..1822691 | - | 1458 | WP_103053613.1 | Trk system potassium transporter TrkG | - |
| CXP54_RS24155 | 1822957..1823106 | + | 150 | WP_002462310.1 | hypothetical protein | - |
| CXP54_RS24160 | 1823658..1823822 | - | 165 | WP_158649889.1 | hypothetical protein | - |
| CXP54_RS09255 | 1824279..1824857 | - | 579 | WP_059227266.1 | bfpT-regulated chaperone | - |
| - | 1825465..1825697 | + | 233 | - | - | Antitoxin |
| - | 1825467..1825570 | - | 104 | - | - | Toxin |
| CXP54_RS09265 | 1825727..1826068 | - | 342 | WP_103053615.1 | YebY family protein | - |
| CXP54_RS09270 | 1826081..1826953 | - | 873 | WP_103053616.1 | copper homeostasis membrane protein CopD | - |
| CXP54_RS09275 | 1826957..1827334 | - | 378 | WP_000741562.1 | CopC domain-containing protein YobA | - |
| CXP54_RS09280 | 1827473..1827703 | + | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| CXP54_RS09285 | 1827870..1828082 | + | 213 | Protein_1718 | carbon-nitrogen hydrolase family protein | - |
| CXP54_RS09290 | 1828106..1828768 | + | 663 | WP_103053617.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T90054 NZ_CP025317:c1825570-1825467 [Escherichia albertii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT90054 NZ_CP025317:1825465-1825697 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCACGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCACGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
