Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1896492..1896760 | Replicon | chromosome |
| Accession | NZ_CP025251 | ||
| Organism | Escherichia coli strain BH100 substr. MG2017 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1896530..1896632 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1896492..1896760 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BH100B_RS09850 | 1893649..1895088 | + | 1440 | WP_001298454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BH100B_RS09855 | 1895206..1895442 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BH100B_RS09860 | 1895547..1895738 | + | 192 | WP_001296140.1 | YebW family protein | - |
| BH100B_RS09865 | 1895739..1896395 | - | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| - | 1896492..1896760 | + | 269 | - | - | Antitoxin |
| - | 1896530..1896632 | - | 103 | - | - | Toxin |
| BH100B_RS09870 | 1896790..1897131 | - | 342 | WP_000984819.1 | YebY family protein | - |
| BH100B_RS09875 | 1897144..1898016 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| BH100B_RS09880 | 1898020..1898394 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| BH100B_RS09885 | 1898533..1898763 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BH100B_RS09890 | 1898866..1899522 | + | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein | - |
| BH100B_RS09895 | 1899546..1900208 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T89938 NZ_CP025251:c1896632-1896530 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT89938 NZ_CP025251:1896492-1896760 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
