Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 1844713..1845548 | Replicon | chromosome |
| Accession | NZ_CP025048 | ||
| Organism | Escherichia coli strain SC516 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | A0A7W4PV54 |
| Locus tag | CWI33_RS09290 | Protein ID | WP_000854821.1 |
| Coordinates | 1845171..1845548 (+) | Length | 126 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | - |
| Locus tag | CWI33_RS09285 | Protein ID | WP_032216526.1 |
| Coordinates | 1844713..1845081 (+) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CWI33_RS09245 | 1839845..1840729 | + | 885 | WP_000010399.1 | 50S ribosome-binding GTPase | - |
| CWI33_RS09250 | 1840848..1841525 | + | 678 | WP_001097362.1 | hypothetical protein | - |
| CWI33_RS09255 | 1841531..1841764 | + | 234 | WP_001278288.1 | DUF905 family protein | - |
| CWI33_RS09260 | 1841854..1842672 | + | 819 | WP_100881928.1 | DUF945 domain-containing protein | - |
| CWI33_RS09265 | 1842764..1843249 | + | 486 | WP_032216512.1 | antirestriction protein | - |
| CWI33_RS09270 | 1843265..1843741 | + | 477 | WP_001186724.1 | RadC family protein | - |
| CWI33_RS09275 | 1843810..1844031 | + | 222 | WP_001601167.1 | DUF987 domain-containing protein | - |
| CWI33_RS09280 | 1844050..1844694 | + | 645 | Protein_1713 | antitoxin of toxin-antitoxin stability system | - |
| CWI33_RS09285 | 1844713..1845081 | + | 369 | WP_032216526.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| CWI33_RS09290 | 1845171..1845548 | + | 378 | WP_000854821.1 | type IV toxin-antitoxin system toxin CbtA | Toxin |
| CWI33_RS09295 | 1845545..1845694 | + | 150 | Protein_1716 | hypothetical protein | - |
| CWI33_RS09300 | 1845770..1845967 | + | 198 | WP_023563519.1 | DUF957 domain-containing protein | - |
| CWI33_RS09305 | 1846052..1846894 | + | 843 | WP_001280501.1 | DUF4942 domain-containing protein | - |
| CWI33_RS09310 | 1847176..1847712 | - | 537 | WP_063091691.1 | GspM family type II secretion system protein YghD | - |
| CWI33_RS09315 | 1847714..1848892 | - | 1179 | WP_000094962.1 | type II secretion system protein GspL | - |
| CWI33_RS09320 | 1848889..1849866 | - | 978 | WP_072643195.1 | type II secretion system minor pseudopilin GspK | - |
| CWI33_RS09325 | 1849869..1850468 | - | 600 | WP_072643194.1 | type II secretion system minor pseudopilin GspJ | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integrative and Conjugative Element | - | papC / papD / gspM / gspL / gspK / gspJ / gspI / gspH / gspG / gspF / gspE / gspD / gspC | 1783285..1907772 | 124487 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 126 a.a. Molecular weight: 13930.95 Da Isoelectric Point: 8.5163
>T89637 WP_000854821.1 NZ_CP025048:1845171-1845548 [Escherichia coli]
MKTLPVLPGQAASSRPSPVEIWQTLLTRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SACTRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKHPGAKQ
MKTLPVLPGQAASSRPSPVEIWQTLLTRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SACTRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKHPGAKQ
Download Length: 378 bp
>T89637 NZ_CP025048:1845171-1845548 [Escherichia coli]
ATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCACGCCCGTCTCCGGTTGAAATCTGGCAGACACTGCTCAC
CCGACTGCTGGATCAGCACTACGGCCTTACGCTGAATGACACACCGTTCGCTGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGCATTTCACTGTGCGATGCGGTGAACTTTCTCGTTGAAAAATACGCACTGGTACGTACCGACCAGCCGGGATTC
AGCGCCTGTACCCGTTCTCAGTTAATAAACAGTATTGATATCCTCCGGGCACGCCGGGCAACCGGCCTGATGACACGCGA
CAACTACAGAACGGTAAATAACATTACCCTGGGTAAACATCCGGGGGCGAAACAATGA
ATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCACGCCCGTCTCCGGTTGAAATCTGGCAGACACTGCTCAC
CCGACTGCTGGATCAGCACTACGGCCTTACGCTGAATGACACACCGTTCGCTGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGCATTTCACTGTGCGATGCGGTGAACTTTCTCGTTGAAAAATACGCACTGGTACGTACCGACCAGCCGGGATTC
AGCGCCTGTACCCGTTCTCAGTTAATAAACAGTATTGATATCCTCCGGGCACGCCGGGCAACCGGCCTGATGACACGCGA
CAACTACAGAACGGTAAATAACATTACCCTGGGTAAACATCCGGGGGCGAAACAATGA
Antitoxin
Download Length: 123 a.a. Molecular weight: 13810.69 Da Isoelectric Point: 6.2066
>AT89637 WP_032216526.1 NZ_CP025048:1844713-1845081 [Escherichia coli]
VSDKLHETNYPDDHNDRLWWGLLCTVTPCFGARLVQEGNRLHYLVDRAGIRGLFSDADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPETKK
VSDKLHETNYPDDHNDRLWWGLLCTVTPCFGARLVQEGNRLHYLVDRAGIRGLFSDADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPETKK
Download Length: 369 bp
>AT89637 NZ_CP025048:1844713-1845081 [Escherichia coli]
GTGTCAGACAAACTCCATGAGACAAATTATCCCGACGACCATAACGACCGCCTCTGGTGGGGACTGCTCTGCACCGTGAC
GCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGTCGACCGCGCCGGCATCAGAGGCCTGT
TCAGCGATGCAGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAGCTCATGCTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCGTGACACTGTATGCGAAGGGGCTGACCTGTGAAGCCGACACCCTCGGCTCCTG
TGGTTACGTTTATCTGGCTGTTTATCCGACGCCCGAAACGAAAAAGTAA
GTGTCAGACAAACTCCATGAGACAAATTATCCCGACGACCATAACGACCGCCTCTGGTGGGGACTGCTCTGCACCGTGAC
GCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGTCGACCGCGCCGGCATCAGAGGCCTGT
TCAGCGATGCAGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAGCTCATGCTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCGTGACACTGTATGCGAAGGGGCTGACCTGTGAAGCCGACACCCTCGGCTCCTG
TGGTTACGTTTATCTGGCTGTTTATCCGACGCCCGAAACGAAAAAGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|