Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2743687..2743890 | Replicon | chromosome |
| Accession | NZ_CP024812 | ||
| Organism | Enterobacter sp. CRENT-193 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2743780..2743883 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2743687..2743890 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CU081_RS13545 | 2740224..2740886 | - | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
| CU081_RS13550 | 2740911..2741561 | - | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| CU081_RS13555 | 2741673..2741903 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| CU081_RS13560 | 2742041..2742412 | + | 372 | WP_022651439.1 | CopC domain-containing protein YobA | - |
| CU081_RS13565 | 2742414..2743283 | + | 870 | WP_022651438.1 | copper homeostasis membrane protein CopD | - |
| CU081_RS13570 | 2743300..2743638 | + | 339 | WP_003859787.1 | YebY family protein | - |
| - | 2743687..2743890 | - | 204 | - | - | Antitoxin |
| - | 2743780..2743883 | + | 104 | - | - | Toxin |
| CU081_RS13575 | 2743961..2745046 | - | 1086 | WP_039268953.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| CU081_RS13580 | 2745015..2745287 | - | 273 | WP_023300430.1 | hypothetical protein | - |
| CU081_RS13585 | 2745408..2745929 | - | 522 | WP_047725139.1 | hypothetical protein | - |
| CU081_RS13590 | 2745986..2746201 | - | 216 | WP_053004013.1 | TraR/DksA family transcriptional regulator | - |
| CU081_RS13595 | 2746293..2746523 | - | 231 | WP_047725137.1 | hypothetical protein | - |
| CU081_RS13600 | 2746520..2746741 | - | 222 | WP_047725134.1 | hypothetical protein | - |
| CU081_RS13605 | 2746738..2746956 | - | 219 | WP_047720562.1 | hypothetical protein | - |
| CU081_RS13610 | 2746966..2747682 | - | 717 | WP_072058660.1 | DNA cytosine methyltransferase | - |
| CU081_RS13615 | 2747679..2748341 | - | 663 | WP_058663640.1 | DNA methyltransferase | - |
| CU081_RS13620 | 2748317..2748844 | - | 528 | WP_058663639.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | gtrB / gtrA | 2722942..2809472 | 86530 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T88569 NZ_CP024812:2743780-2743883 [Enterobacter sp. CRENT-193]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 204 bp
>AT88569 NZ_CP024812:c2743890-2743687 [Enterobacter sp. CRENT-193]
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
