Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2293180..2293262 Replicon chromosome
Accession NZ_CP024711
Organism Dickeya solani strain IFB 0099

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2293182..2293262 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2293180..2293262 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DSOL99_RS10350 2289044..2290141 - 1098 WP_022633455.1 HDOD domain-containing protein -
DSOL99_RS10355 2290132..2291247 - 1116 WP_022633456.1 sensor histidine kinase -
DSOL99_RS10360 2291240..2292364 - 1125 WP_022633457.1 FIST C-terminal domain-containing protein -
DSOL99_RS10365 2292731..2292961 + 231 WP_198560147.1 aminopeptidase -
- 2293180..2293262 + 83 - - Antitoxin
- 2293182..2293262 - 81 - - Toxin
DSOL99_RS10370 2293432..2293770 - 339 WP_022633458.1 YebY family protein -
DSOL99_RS10375 2294289..2294732 + 444 WP_022633459.1 hypothetical protein -
DSOL99_RS10380 2295084..2295332 + 249 WP_022633460.1 GlsB/YeaQ/YmgE family stress response membrane protein -
DSOL99_RS10385 2295449..2297191 - 1743 WP_022633461.1 ABC transporter permease subunit -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 2286926..2295332 8406


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 81 bp

>T88410 NZ_CP024711:c2293262-2293182 [Dickeya solani]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T

Antitoxin


Download         Length: 83 bp

>AT88410 NZ_CP024711:2293180-2293262 [Dickeya solani]
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References