Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2684077..2684348 | Replicon | chromosome |
| Accession | NZ_CP024618 | ||
| Organism | Escherichia coli strain SMN152SH1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2684115..2684218 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2684077..2684348 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CR916_RS15730 | 2681234..2682673 | + | 1440 | WP_024226338.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CR916_RS15735 | 2682791..2683027 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CR916_RS15740 | 2683132..2683323 | + | 192 | WP_001296140.1 | YebW family protein | - |
| CR916_RS15745 | 2683324..2683980 | - | 657 | WP_000812722.1 | protein-serine/threonine phosphatase | - |
| - | 2684077..2684348 | + | 272 | - | - | Antitoxin |
| - | 2684115..2684218 | - | 104 | - | - | Toxin |
| CR916_RS15750 | 2684376..2684717 | - | 342 | WP_000976472.1 | YebY family protein | - |
| CR916_RS15755 | 2684730..2685602 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| CR916_RS15760 | 2685606..2685980 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| CR916_RS15765 | 2686119..2686349 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CR916_RS15770 | 2686451..2687107 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| CR916_RS15775 | 2687131..2687793 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T88079 NZ_CP024618:c2684218-2684115 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT88079 NZ_CP024618:2684077-2684348 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
