Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1977020..1977165 | Replicon | chromosome |
| Accession | NZ_CP024545 | ||
| Organism | Klebsiella pneumoniae strain INF059 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1977056..1977158 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1977020..1977165 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CTI65_RS09975 | 1972150..1974210 | + | 2061 | WP_099728950.1 | oligopeptidase B | - |
| CTI65_RS09980 | 1974214..1974873 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| CTI65_RS09985 | 1974952..1975182 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| CTI65_RS09990 | 1975295..1975669 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| CTI65_RS09995 | 1975673..1976542 | + | 870 | WP_020956678.1 | copper homeostasis membrane protein CopD | - |
| CTI65_RS10000 | 1976559..1976897 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1977020..1977165 | - | 146 | - | - | Antitoxin |
| - | 1977056..1977158 | + | 103 | - | - | Toxin |
| CTI65_RS28180 | 1977533..1977676 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| CTI65_RS10010 | 1977781..1978749 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| CTI65_RS10015 | 1978906..1979559 | + | 654 | WP_020802220.1 | protein-serine/threonine phosphatase | - |
| CTI65_RS10020 | 1979556..1979747 | - | 192 | WP_002911395.1 | YebW family protein | - |
| CTI65_RS10025 | 1979845..1980084 | - | 240 | WP_002911393.1 | YebV family protein | - |
| CTI65_RS10030 | 1980200..1981633 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T87918 NZ_CP024545:1977056-1977158 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT87918 NZ_CP024545:c1977165-1977020 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
