Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2093975..2094246 | Replicon | chromosome |
| Accession | NZ_CP024131 | ||
| Organism | Escherichia coli strain 14EC007 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2094105..2094208 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2093975..2094246 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CR535_RS11080 | 2090530..2091192 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CR535_RS11085 | 2091216..2091872 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CR535_RS11090 | 2091974..2092204 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CR535_RS11095 | 2092343..2092717 | + | 375 | WP_000168736.1 | CopC domain-containing protein YobA | - |
| CR535_RS11100 | 2092721..2093593 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| CR535_RS11105 | 2093606..2093947 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2093975..2094246 | - | 272 | - | - | Antitoxin |
| - | 2094105..2094208 | + | 104 | - | - | Toxin |
| CR535_RS11110 | 2094343..2094999 | + | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| CR535_RS11115 | 2095000..2095191 | - | 192 | WP_001313035.1 | YebW family protein | - |
| CR535_RS11120 | 2095296..2095532 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CR535_RS11125 | 2095650..2097089 | - | 1440 | WP_001383086.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T86812 NZ_CP024131:2094105-2094208 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT86812 NZ_CP024131:c2094246-2093975 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
